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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 164 165 166 167 168 169 170 171 172 ... 1720 1721 » 8351-8400 / 86044 show all
ghariani-varprowl	SNP	*	HG002complexvar	homalt	99.6051	99.9428	99.2696	21.6199	288407	165	288526	2123	1441	67.8756
ltrigg-rtg1	SNP	ti	map_l250_m2_e1	homalt	99.6047	99.5485	99.6610	87.3743	1764	8	1764	6	6	100.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.6047	99.4083	99.8020	85.1950	504	3	504	1	0	0.0000
bgallagher-sentieon	SNP	tv	HG002compoundhet	het	99.6043	99.6576	99.5511	55.0192	4657	16	4657	21	5	23.8095
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6042	99.3980	99.8112	69.7820	2642	16	2643	5	3	60.0000
raldana-dualsentieon	SNP	ti	segdup	*	99.6041	99.8055	99.4035	89.2386	19499	38	19497	117	4	3.4188
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6041	99.3604	99.8489	69.0699	2641	17	2643	4	2	50.0000
cchapple-custom	SNP	ti	segdup	*	99.6040	99.8311	99.3779	91.2552	19504	33	19490	122	16	13.1148
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.6037	99.7194	99.4884	35.8783	2132	6	2139	11	2	18.1818
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6035	99.5149	99.6923	54.6489	6154	30	6156	19	5	26.3158
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6034	99.3181	99.8903	51.3153	3641	25	3642	4	4	100.0000
jli-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6032	99.8263	99.3810	56.4884	17820	31	17821	111	6	5.4054
jlack-gatk	SNP	ti	map_siren	homalt	99.6031	99.2879	99.9204	49.0602	37646	270	37640	30	20	66.6667
egarrison-hhga	SNP	*	segdup	*	99.6030	99.6793	99.5269	89.4388	27977	90	27977	133	40	30.0752
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6029	99.2089	100.0000	43.0390	3637	29	3625	0	0
hfeng-pmm2	INDEL	I1_5	*	het	99.6023	99.4952	99.7096	59.9116	78642	399	78624	229	130	56.7686
hfeng-pmm2	SNP	ti	map_l150_m0_e0	homalt	99.6019	99.6740	99.5298	75.8368	2752	9	2752	13	5	38.4615
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6018	99.6976	99.5062	56.7205	3627	11	3627	18	18	100.0000
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6018	99.6636	99.5400	55.7604	11258	38	11253	52	41	78.8462
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6017	99.5025	99.7012	65.7688	1000	5	1001	3	2	66.6667
eyeh-varpipe	SNP	*	map_l100_m0_e0	hetalt	99.6016	100.0000	99.2063	70.4918	16	0	125	1	0	0.0000
rpoplin-dv42	INDEL	*	HG002complexvar	homalt	99.6016	99.4265	99.7773	55.5190	26872	155	26879	60	53	88.3333
ltrigg-rtg1	SNP	ti	func_cds	het	99.6011	99.8471	99.3563	21.6630	8491	13	8490	55	1	1.8182
jlack-gatk	SNP	*	map_siren	homalt	99.6008	99.2857	99.9179	50.5286	54762	394	54753	45	30	66.6667
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6007	99.4924	99.7093	41.1337	2744	14	2744	8	5	62.5000
jli-custom	SNP	ti	map_l150_m0_e0	homalt	99.6006	99.3481	99.8544	71.0140	2743	18	2743	4	4	100.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6003	99.6750	99.5257	31.5929	4601	15	4616	22	2	9.0909
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6003	99.4016	99.7997	45.8452	3987	24	3987	8	0	0.0000
gduggal-snapfb	SNP	*	segdup	homalt	99.6002	99.7114	99.4891	90.4625	10712	31	10711	55	17	30.9091
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6000	99.6361	99.5640	74.0720	1369	5	1370	6	0	0.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5999	99.7890	99.4115	47.4486	2365	5	2365	14	13	92.8571
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5998	99.7544	99.4458	51.6487	10153	25	10587	59	58	98.3051
ckim-vqsr	INDEL	I1_5	*	het	99.5998	99.5116	99.6881	61.9903	78655	386	78634	246	145	58.9431
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5998	99.2908	99.9108	42.6598	1120	8	1120	1	1	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5997	99.7468	99.4531	47.3533	2364	6	2364	13	13	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5993	99.5000	99.6988	76.7994	2985	15	2979	9	4	44.4444
bgallagher-sentieon	SNP	*	map_siren	*	99.5992	99.6902	99.5084	55.5562	145775	453	145752	720	102	14.1667
cchapple-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5991	99.7991	99.4000	72.8360	21855	44	21701	131	126	96.1832
dgrover-gatk	INDEL	*	*	het	99.5990	99.6559	99.5422	61.2168	193465	668	193091	888	555	62.5000
gduggal-bwafb	SNP	*	*	hetalt	99.5989	99.7704	99.4279	53.2620	869	2	869	5	5	100.0000
gduggal-bwafb	SNP	tv	*	hetalt	99.5989	99.7704	99.4279	53.2620	869	2	869	5	5	100.0000
jlack-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5984	99.3135	99.8849	60.1010	1736	12	1736	2	2	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.5984	99.3324	99.8658	78.7628	1488	10	1488	2	2	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5983	99.6119	99.5848	74.9525	33107	129	33101	138	106	76.8116
jli-custom	SNP	ti	map_l125_m0_e0	homalt	99.5980	99.3097	99.8880	64.8868	4460	31	4460	5	5	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.5979	99.1989	100.0000	79.0898	1486	12	1507	0	0
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5978	99.3202	99.8769	36.6057	7305	50	7301	9	4	44.4444
gduggal-bwafb	SNP	*	map_l100_m2_e1	homalt	99.5977	99.3200	99.8770	64.6290	27607	189	27607	34	20	58.8235
hfeng-pmm3	SNP	*	map_l125_m0_e0	homalt	99.5977	99.5828	99.6125	70.7306	6684	28	6684	26	9	34.6154
hfeng-pmm3	INDEL	D1_5	*	het	99.5975	99.3183	99.8783	55.2507	86977	597	86982	106	53	50.0000

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