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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 163 164 165 166 167 168 169 170 171 ... 1720 1721 » 8301-8350 / 86044 show all
hfeng-pmm1	SNP	tv	map_siren	het	99.6130	99.4093	99.8175	56.2607	28440	169	28435	52	14	26.9231
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6125	99.4327	99.7930	57.8718	3856	22	3856	8	3	37.5000
hfeng-pmm3	INDEL	D1_5	map_l100_m0_e0	homalt	99.6124	99.6124	99.6124	80.3503	257	1	257	1	1	100.0000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6122	99.3198	99.9063	37.9962	10659	73	10659	10	4	40.0000
jli-custom	SNP	*	HG002compoundhet	het	99.6122	99.6614	99.5631	45.6634	14130	48	14128	62	24	38.7097
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6121	99.2918	99.9344	37.2432	10656	76	10656	7	1	14.2857
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6120	99.6463	99.5777	54.2814	10142	36	10139	43	40	93.0233
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6119	99.6119	99.6119	77.7554	770	3	770	3	0	0.0000
hfeng-pmm1	SNP	tv	map_l100_m2_e0	*	99.6119	99.4647	99.7596	65.8235	24899	134	24895	60	17	28.3333
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6119	99.6119	99.6119	77.7426	770	3	770	3	0	0.0000
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6119	99.7409	99.4832	68.3306	3080	8	3080	16	13	81.2500
hfeng-pmm1	SNP	tv	map_l100_m2_e1	*	99.6118	99.4660	99.7580	65.8552	25148	135	25144	61	17	27.8689
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6118	99.3853	99.8394	49.0173	11802	73	11810	19	12	63.1579
ltrigg-rtg1	INDEL	D1_5	map_l100_m0_e0	homalt	99.6116	99.6124	99.6109	81.3091	257	1	256	1	1	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6114	99.4825	99.7406	76.8607	769	4	769	2	0	0.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6114	99.4825	99.7406	77.9336	769	4	769	2	0	0.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6112	99.4825	99.7403	78.0188	769	4	768	2	0	0.0000
dgrover-gatk	SNP	*	map_l125_m2_e1	homalt	99.6110	99.3269	99.8967	66.5258	17414	118	17414	18	13	72.2222
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6109	99.2248	100.0000	61.6192	256	2	256	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6109	99.2248	100.0000	61.7910	256	2	256	0	0
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6109	99.2248	100.0000	62.0178	256	2	256	0	0
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6106	99.5460	99.6753	76.5566	1535	7	1535	5	3	60.0000
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6106	99.4231	99.7987	35.5602	3964	23	3966	8	6	75.0000
gduggal-bwavard	SNP	ti	func_cds	homalt	99.6099	99.2227	100.0000	20.4486	5234	41	5213	0	0
ckim-dragen	SNP	ti	func_cds	*	99.6097	99.9637	99.2582	28.1352	13782	5	13782	103	1	0.9709
jli-custom	SNP	ti	segdup	*	99.6094	99.8669	99.3533	88.6519	19511	26	19511	127	6	4.7244
ndellapenna-hhga	SNP	ti	map_l125_m0_e0	homalt	99.6092	99.3097	99.9104	66.0377	4460	31	4460	4	4	100.0000
dgrover-gatk	SNP	*	map_l125_m1_e0	homalt	99.6085	99.3256	99.8929	63.9547	16791	114	16791	18	13	72.2222
gduggal-bwafb	SNP	tv	map_l100_m2_e0	homalt	99.6083	99.3597	99.8582	65.9435	9155	59	9155	13	7	53.8462
bgallagher-sentieon	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6082	99.8778	99.3401	60.0690	55563	68	55552	369	30	8.1301
astatham-gatk	SNP	*	map_l100_m1_e0	homalt	99.6081	99.3075	99.9106	57.8259	26816	187	26816	24	19	79.1667
eyeh-varpipe	SNP	*	map_l150_m2_e0	hetalt	99.6078	100.0000	99.2188	75.1456	20	0	127	1	0	0.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6078	99.4778	99.7382	83.1048	381	2	381	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6078	99.8428	99.3740	52.6140	2540	4	2540	16	2	12.5000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6078	99.8428	99.3740	51.5542	2540	4	2540	16	1	6.2500
gduggal-bwafb	SNP	tv	*	het	99.6077	99.8543	99.3624	27.5297	590842	862	590931	3792	213	5.6171
dgrover-gatk	SNP	*	map_l125_m2_e0	homalt	99.6075	99.3209	99.8958	66.5083	17257	118	17257	18	13	72.2222
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6074	99.3012	99.9156	37.6986	10657	75	10657	9	0	0.0000
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6073	99.7455	99.4695	62.0342	784	2	750	4	0	0.0000
ltrigg-rtg2	SNP	ti	func_cds	het	99.6069	99.8354	99.3795	21.1847	8490	14	8489	53	1	1.8868
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.4206	380	3	380	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.4783	380	3	380	0	0
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.3552	380	3	380	0	0
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6068	99.2167	100.0000	83.3552	380	3	380	0	0
gduggal-bwafb	SNP	tv	map_l100_m2_e1	homalt	99.6066	99.3550	99.8595	65.9755	9242	60	9242	13	7	53.8462
gduggal-bwafb	SNP	tv	map_l100_m1_e0	homalt	99.6065	99.3586	99.8555	63.7543	8985	58	8985	13	7	53.8462
ltrigg-rtg1	INDEL	*	*	homalt	99.6060	99.3824	99.8305	54.1259	124398	773	124268	211	185	87.6777
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6057	99.2925	99.9209	50.5187	2526	18	2526	2	0	0.0000
hfeng-pmm1	SNP	tv	map_l100_m1_e0	*	99.6055	99.4531	99.7584	64.1006	24367	134	24363	59	17	28.8136
hfeng-pmm1	SNP	*	map_l125_m0_e0	homalt	99.6052	99.5977	99.6126	70.8610	6685	27	6685	26	9	34.6154

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