PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8201-8250 / 86044 show all
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
64.4180
267026722
100.0000
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2907
267026722
100.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.1635
267026722
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
ckim-gatkINDELD1_5*het
99.6268
99.8162
99.4381
60.7761
8741316187419494126
25.5061
jmaeng-gatkSNPti*homalt
99.6264
99.2642
99.9912
16.0789
79712959097971207046
65.7143
jmaeng-gatkSNP**het
99.6262
99.6225
99.6299
27.1537
1866514707318663916934179
2.5815
ltrigg-rtg1SNPtimap_l250_m1_e0homalt
99.6262
99.5022
99.7505
86.3540
15998159944
100.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6262
99.2553
100.0000
69.5205
239918237100
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6261
99.8129
99.4400
42.7465
213442131122
16.6667
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6260
99.6141
99.6379
82.9126
4130164128158
53.3333
ltrigg-rtg2SNPtimap_l250_m1_e0homalt
99.6259
99.4400
99.8126
84.3683
15989159833
100.0000
astatham-gatkSNPtimap_l100_m1_e0homalt
99.6258
99.3318
99.9216
57.0466
17840120178401413
92.8571
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6255
99.4585
99.7930
57.9022
385721385780
0.0000
dgrover-gatkSNPtvmap_siren*
99.6255
99.6408
99.6103
59.7727
457651654575717935
19.5531
cchapple-customINDELI6_15segduphet
99.6255
100.0000
99.2537
92.8034
83013310
0.0000
astatham-gatkINDELI1_5HG002complexvarhet
99.6251
99.3568
99.8949
58.0548
1807211718051199
47.3684
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.6249
99.5200
99.7301
51.4696
1181857118233215
46.8750
jli-customINDELI1_5map_l100_m2_e0homalt
99.6248
100.0000
99.2523
80.8106
531053143
75.0000
hfeng-pmm1SNP*segduphet
99.6248
99.6939
99.5558
89.5848
172645317258770
0.0000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6247
99.3452
99.9058
74.7803
212414212221
50.0000
egarrison-hhgaSNPtvmap_siren*
99.6246
99.3686
99.8818
55.8072
45640290456405425
46.2963
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6241
99.2509
100.0000
64.3909
265226600
ckim-gatkSNPti*homalt
99.6240
99.2571
99.9936
16.1503
79707259667970635133
64.7059
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.6240
99.5376
99.7106
36.1655
17228172355
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6239
99.8416
99.4072
41.3357
107151710732647
10.9375
raldana-dualsentieonINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.6236
99.4987
99.7487
64.4007
397239710
0.0000
hfeng-pmm2INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.6236
99.4987
99.7487
63.6197
397239711
100.0000
ltrigg-rtg1INDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6234
99.7183
99.5287
62.3224
10623105653
60.0000
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6231
99.4357
99.8113
69.4243
264315264552
40.0000
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6226
99.6991
99.5463
74.7408
3313610033130151120
79.4702
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
99.6226
99.2481
100.0000
62.3932
396339600
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6226
99.3415
99.9054
80.1278
10567105611
100.0000
rpoplin-dv42SNP*map_siren*
99.6224
99.5097
99.7354
54.5067
145511717145497386225
58.2902
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.6224
99.6697
99.5753
80.0565
42241442201810
55.5556
ltrigg-rtg2SNPtvmap_l150_m0_e0homalt
99.6224
99.3223
99.9242
72.7891
13199131910
0.0000
egarrison-hhgaSNPtvmap_l150_m0_e0homalt
99.6224
99.3223
99.9242
75.6143
13199131911
100.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6222
99.3336
99.9125
51.6616
25190169251132214
63.6364
bgallagher-sentieonSNPtvmap_l100_m0_e0homalt
99.6221
99.4020
99.8433
61.4866
382323382364
66.6667
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6218
100.0000
99.2465
77.6468
922092273
42.8571
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6218
99.4099
99.8345
72.5123
539132543090
0.0000
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6218
99.4099
99.8345
72.5123
539132543090
0.0000
hfeng-pmm3SNPtvsegduphet
99.6218
99.6974
99.5464
90.8847
5271165267240
0.0000
jli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.6216
99.8758
99.3687
35.8426
7238972414644
95.6522
gduggal-bwafbSNP*func_cds*
99.6211
99.9504
99.2939
30.1552
181419181411292
1.5504
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6208
99.3177
99.9258
72.3505
538637538644
100.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6208
99.3177
99.9258
72.3505
538637538644
100.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6207
99.7468
99.4949
51.0355
15764157680
0.0000
qzeng-customSNPti*homalt
99.6207
99.3383
99.9047
15.9860
7977255314792891756473
62.5661