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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 159 160 161 162 163 164 165 166 167 ... 1720 1721 » 8101-8150 / 86044 show all
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6445	99.8219	99.4677	58.2805	3924	7	3924	21	2	9.5238
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6443	99.5626	99.7262	54.5715	3642	16	3642	10	5	50.0000
hfeng-pmm3	SNP	tv	map_l100_m2_e0	*	99.6443	99.6005	99.6881	66.3015	24933	100	24929	78	10	12.8205
bgallagher-sentieon	SNP	tv	map_l150_m2_e0	homalt	99.6442	99.4612	99.8279	71.1244	4061	22	4061	7	5	71.4286
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6440	99.4227	99.8662	57.6502	2239	13	2239	3	0	0.0000
jli-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6439	99.6762	99.6117	68.6485	3078	10	3078	12	8	66.6667
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6438	99.6438	99.6438	69.4439	3077	11	3077	11	8	72.7273
ckim-dragen	SNP	*	map_l100_m1_e0	homalt	99.6437	99.4186	99.8698	55.6951	26846	157	26851	35	32	91.4286
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.6436	99.4310	99.8571	47.4080	699	4	699	1	1	100.0000
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6434	99.5326	99.7544	48.4618	4046	19	4061	10	1	10.0000
eyeh-varpipe	SNP	ti	HG002complexvar	hetalt	99.6433	99.5169	99.7701	22.0458	206	1	6075	14	13	92.8571
bgallagher-sentieon	INDEL	I1_5	*	homalt	99.6433	99.8593	99.4283	55.0054	60343	85	60348	347	343	98.8473
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.6431	99.2888	100.0000	46.4313	698	5	698	0	0
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.6431	99.2888	100.0000	35.3991	698	5	688	0	0
ltrigg-rtg2	SNP	ti	map_l125_m0_e0	homalt	99.6428	99.3765	99.9105	65.1370	4463	28	4463	4	4	100.0000
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6427	99.5150	99.7707	54.4892	25236	123	25236	58	45	77.5862
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6416	99.4125	99.8717	75.1815	3892	23	3892	5	5	100.0000
hfeng-pmm1	INDEL	I1_5	*	het	99.6416	99.5559	99.7275	59.6258	78690	351	78673	215	113	52.5581
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6415	99.4695	99.8142	51.5034	11812	63	11817	22	15	68.1818
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6415	99.7240	99.5592	34.7388	7227	20	7227	32	32	100.0000
jli-custom	SNP	tv	HG002compoundhet	*	99.6414	99.6526	99.6301	48.9851	8892	31	8889	33	14	42.4242
dgrover-gatk	SNP	ti	map_l125_m1_e0	homalt	99.6414	99.3753	99.9090	63.5537	10976	69	10976	10	8	80.0000
hfeng-pmm1	SNP	tv	segdup	het	99.6406	99.6785	99.6028	90.6534	5270	17	5266	21	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6400	99.7837	99.4968	65.7726	1384	3	1384	7	0	0.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.6399	99.2823	100.0000	45.3947	415	3	415	0	0
hfeng-pmm3	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.6399	99.2823	100.0000	45.1783	415	3	415	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.6399	99.2823	100.0000	45.8931	415	3	415	0	0
astatham-gatk	INDEL	I1_5	HG002complexvar	*	99.6397	99.4275	99.8527	57.1222	33172	191	33219	49	39	79.5918
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6397	99.6465	99.6329	33.8966	7329	26	7327	27	8	29.6296
jpowers-varprowl	SNP	*	HG002complexvar	homalt	99.6393	99.9463	99.3342	21.7803	288419	155	288542	1934	1452	75.0776
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6389	99.6975	99.5803	59.3397	17797	54	17796	75	5	6.6667
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.6387	99.6019	99.6756	81.2035	10758	43	10754	35	19	54.2857
hfeng-pmm3	SNP	tv	map_l100_m1_e0	*	99.6386	99.5919	99.6854	64.5700	24401	100	24397	77	10	12.9870
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6385	99.6385	99.6385	58.9249	1378	5	1378	5	4	80.0000
gduggal-snapvard	SNP	ti	func_cds	homalt	99.6385	99.2986	99.9808	20.4816	5238	37	5217	1	1	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6384	99.4387	99.8390	60.5902	2480	14	2480	4	0	0.0000
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6381	99.7391	99.5373	34.1584	3441	9	3442	16	3	18.7500
raldana-dualsentieon	INDEL	D1_5	segdup	het	99.6380	99.4220	99.8551	93.9785	688	4	689	1	0	0.0000
hfeng-pmm3	INDEL	D1_5	segdup	het	99.6380	99.4220	99.8551	93.8431	688	4	689	1	0	0.0000
ckim-dragen	SNP	*	map_l100_m2_e0	homalt	99.6377	99.4114	99.8650	58.3933	27361	162	27366	37	33	89.1892
ckim-dragen	SNP	*	map_l100_m2_e1	homalt	99.6376	99.4100	99.8663	58.3837	27632	164	27637	37	33	89.1892
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6375	99.8969	99.3795	60.3689	3874	4	3844	24	2	8.3333
raldana-dualsentieon	INDEL	D1_5	segdup	*	99.6373	99.5467	99.7280	94.0940	1098	5	1100	3	2	66.6667
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6370	99.4177	99.8572	53.8488	14684	86	14686	21	13	61.9048
dgrover-gatk	SNP	ti	map_l125_m2_e1	homalt	99.6368	99.3629	99.9122	66.1709	11385	73	11385	10	8	80.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.6360	99.4350	99.8379	27.9708	2464	14	2463	4	0	0.0000
hfeng-pmm2	INDEL	*	segdup	homalt	99.6360	99.7917	99.4808	93.2596	958	2	958	5	4	80.0000
ltrigg-rtg1	INDEL	*	segdup	homalt	99.6351	99.5833	99.6868	92.9210	956	4	955	3	3	100.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6346	99.4826	99.7870	59.5165	16344	85	17330	37	22	59.4595
egarrison-hhga	SNP	ti	segdup	*	99.6343	99.7134	99.5554	88.9440	19481	56	19481	87	25	28.7356

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