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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8051-8100 / 86044 show all
rpoplin-dv42SNPtvHG002compoundhet*
99.6523
99.5965
99.7081
48.4905
88873688802619
73.0769
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6522
99.4792
99.8258
69.0232
573357311
100.0000
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6516
99.4206
99.8837
61.5213
858585911
100.0000
jlack-gatkSNP*HG002compoundhethetalt
99.6512
99.4200
99.8834
22.4231
857585711
100.0000
jlack-gatkSNPtvHG002compoundhethetalt
99.6512
99.4200
99.8834
22.4231
857585711
100.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6510
99.4206
99.8824
57.6060
858584911
100.0000
eyeh-varpipeSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
99.6508
100.0000
99.3039
77.5052
13042832
66.6667
bgallagher-sentieonSNP*map_l100_m0_e0homalt
99.6507
99.4320
99.8703
60.0283
1155466115541511
73.3333
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6504
99.6818
99.6191
61.4842
554541775544321223
10.8491
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.6503
99.6503
99.6503
49.2608
855385533
100.0000
jmaeng-gatkSNPti**
99.6502
99.4959
99.8049
21.8521
20749981051320749394056178
4.3886
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6500
99.6294
99.6706
40.2309
67202566562211
50.0000
dgrover-gatkINDELD1_5HG002complexvar*
99.6498
99.5323
99.7675
58.6672
32562153326177666
86.8421
rpoplin-dv42SNPtvsegduphet
99.6497
99.5839
99.7157
91.3241
5265225261150
0.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.6495
99.7661
99.5333
55.1309
853285341
25.0000
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.6495
99.4172
99.8828
51.6714
853585210
0.0000
rpoplin-dv42SNP*HG002compoundhet*
99.6493
99.5895
99.7091
40.7188
25716106257077561
81.3333
jli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6490
99.5246
99.7737
73.4430
33078158330717556
74.6667
hfeng-pmm3SNPtvmap_l100_m0_e0homalt
99.6488
99.6100
99.6877
65.3002
3831153831124
33.3333
ltrigg-rtg1SNPtvmap_l250_m1_e0homalt
99.6487
99.4159
99.8826
86.0259
851585111
100.0000
bgallagher-sentieonSNPtvmap_l150_m2_e1homalt
99.6486
99.4678
99.8301
71.0988
411222411275
71.4286
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6482
99.3452
99.9530
35.3102
212414212611
100.0000
ndellapenna-hhgaSNPtvmap_l100_m0_e0homalt
99.6482
99.4280
99.8694
61.5639
382422382453
60.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.6481
99.5697
99.7266
69.7354
31009134310078534
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.6481
99.5697
99.7266
69.7354
31009134310078534
40.0000
jli-customSNPtvmap_l100_m0_e0homalt
99.6481
99.4020
99.8955
59.7962
382323382344
100.0000
gduggal-bwaplatSNPtifunc_cdshomalt
99.6481
99.2986
100.0000
20.6003
523837523800
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6479
99.8824
99.4145
51.1721
849184955
100.0000
eyeh-varpipeSNPtvmap_l250_m1_e0homalt
99.6477
99.5327
99.7630
89.0347
852484222
100.0000
asubramanian-gatkINDELD1_5*homalt
99.6476
99.6668
99.6283
62.3701
4876316348779182169
92.8571
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6475
99.7647
99.5305
49.7048
848284844
100.0000
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6475
99.7647
99.5305
50.8083
848284844
100.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.6471
99.4131
99.8821
84.7756
847584711
100.0000
asubramanian-gatkSNP*func_cds*
99.6470
99.5537
99.7405
30.0602
180698118066471
2.1277
dgrover-gatkSNPtvHG002compoundhethet
99.6470
99.6790
99.6151
55.4242
46581546581810
55.5556
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6469
99.8428
99.4518
52.6335
254042540142
14.2857
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6469
99.8428
99.4518
50.2823
254042540140
0.0000
jli-customINDELD1_5**
99.6468
99.4746
99.8195
58.9401
145974771146018264201
76.1364
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6468
99.5944
99.6992
79.9741
66302766282011
55.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6468
99.8821
99.4127
54.4823
254132539151
6.6667
ckim-gatkSNP***
99.6466
99.4788
99.8150
23.5123
30386981592130385525632250
4.4389
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.6460
99.6990
99.5931
55.9882
1126234112584637
80.4348
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.6460
99.8227
99.4700
72.0632
563156333
100.0000
ltrigg-rtg1SNP*map_l250_m2_e0homalt
99.6459
99.5160
99.7760
87.2925
267313267366
100.0000
jli-customSNP*map_siren*
99.6458
99.5726
99.7192
52.4710
145603625145591410101
24.6341
hfeng-pmm3SNPtvmap_l100_m2_e1*
99.6458
99.6045
99.6872
66.3290
25183100251797910
12.6582
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.6457
99.4290
99.8635
32.0123
7313427315104
40.0000
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6452
99.7262
99.5644
75.3068
331459133139145104
71.7241
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.6448
99.6448
99.6448
54.2090
22448224486
75.0000
gduggal-bwafbSNPtvsegduphomalt
99.6445
99.5368
99.7524
90.8111
322315322388
100.0000