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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 157 158 159 160 161 162 163 164 165 ... 1720 1721 » 8001-8050 / 86044 show all
dgrover-gatk	SNP	tv	segdup	*	99.6606	99.8359	99.4859	91.6354	8518	14	8514	44	6	13.6364
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6602	99.7743	99.5465	28.6408	442	1	439	2	2	100.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6600	99.6762	99.6439	69.2790	3078	10	3078	11	9	81.8182
jli-custom	SNP	ti	map_siren	*	99.6599	99.5825	99.7375	51.1882	99936	419	99929	263	66	25.0951
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6597	99.8868	99.4337	56.4666	6177	7	6145	35	2	5.7143
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6595	99.3775	99.9431	60.9816	1756	11	1756	1	1	100.0000
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6595	99.3855	99.9350	53.0212	6146	38	6146	4	0	0.0000
hfeng-pmm2	INDEL	*	*	homalt	99.6594	99.8043	99.5149	55.8756	124927	245	124935	609	588	96.5517
hfeng-pmm2	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6591	99.7822	99.5363	71.5494	30694	67	30694	143	139	97.2028
ckim-vqsr	INDEL	I1_5	HG002complexvar	het	99.6583	99.4392	99.8784	58.1585	18087	102	18064	22	13	59.0909
egarrison-hhga	SNP	*	map_siren	*	99.6583	99.4385	99.8791	53.8224	145407	821	145408	176	78	44.3182
jlack-gatk	SNP	ti	*	het	99.6581	99.9316	99.3861	24.9292	1281014	877	1280960	7913	288	3.6396
hfeng-pmm2	INDEL	D1_5	map_siren	homalt	99.6580	99.6575	99.6584	78.7708	1164	4	1167	4	4	100.0000
bgallagher-sentieon	INDEL	D1_5	map_siren	homalt	99.6580	99.6575	99.6584	81.1615	1164	4	1167	4	4	100.0000
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6580	99.3861	99.9314	49.5848	1457	9	1456	1	0	0.0000
hfeng-pmm3	INDEL	D1_5	map_siren	homalt	99.6576	99.5719	99.7434	77.6311	1163	5	1166	3	3	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.6572	99.5964	99.7181	27.1206	2468	10	2476	7	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6571	99.3874	99.9283	62.5798	6976	43	6972	5	3	60.0000
jlack-gatk	SNP	ti	HG002compoundhet	*	99.6570	99.7425	99.5716	36.7466	17433	45	17431	75	22	29.3333
rpoplin-dv42	SNP	ti	HG002compoundhet	*	99.6565	99.5938	99.7193	35.2092	17407	71	17405	49	42	85.7143
ltrigg-rtg2	SNP	ti	map_l250_m2_e0	homalt	99.6564	99.4854	99.8279	85.6390	1740	9	1740	3	3	100.0000
rpoplin-dv42	SNP	ti	map_siren	*	99.6562	99.5227	99.7902	53.3616	99876	479	99868	210	138	65.7143
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6562	99.3685	99.9455	58.6114	11014	70	11010	6	4	66.6667
dgrover-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6558	99.3707	99.9425	60.9526	1737	11	1737	1	1	100.0000
astatham-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6558	99.3707	99.9425	60.7763	1737	11	1737	1	1	100.0000
ckim-gatk	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6558	99.3707	99.9425	60.9877	1737	11	1737	1	1	100.0000
hfeng-pmm1	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6558	99.3707	99.9425	65.7132	1737	11	1737	1	1	100.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6557	99.3868	99.9261	40.5247	4052	25	4055	3	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6556	99.3135	100.0000	34.6057	1302	9	1302	0	0
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6549	99.4561	99.8544	38.0748	2743	15	2743	4	4	100.0000
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6549	99.6320	99.6779	64.1892	2166	8	2166	7	0	0.0000
hfeng-pmm1	SNP	ti	map_l125_m0_e0	homalt	99.6547	99.6215	99.6881	70.0040	4474	17	4474	14	5	35.7143
ckim-vqsr	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6545	99.3358	99.9752	49.3288	4038	27	4038	1	1	100.0000
ckim-dragen	INDEL	D1_5	*	homalt	99.6542	99.8998	99.4098	63.4062	48877	49	48847	290	286	98.6207
gduggal-snapfb	SNP	ti	HG002complexvar	homalt	99.6542	99.7054	99.6030	19.3776	192894	570	192940	769	240	31.2094
ltrigg-rtg2	SNP	*	map_l250_m1_e0	homalt	99.6541	99.4316	99.8777	84.3152	2449	14	2449	3	3	100.0000
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6541	99.6750	99.6331	31.4341	4601	15	4616	17	2	11.7647
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6538	99.3100	100.0000	62.2948	2159	15	2159	0	0
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6538	99.3100	100.0000	62.6082	2159	15	2159	0	0
asubramanian-gatk	INDEL	I1_5	HG002complexvar	homalt	99.6538	99.5092	99.7987	52.7938	13382	66	13389	27	26	96.2963
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6537	99.9306	99.3785	69.0135	1439	1	1439	9	0	0.0000
jlack-gatk	SNP	ti	HG002compoundhet	hetalt	99.6534	99.3092	100.0000	21.8750	575	4	575	0	0
ghariani-varprowl	SNP	tv	*	homalt	99.6533	99.9547	99.3538	23.4817	376950	171	377023	2452	1194	48.6949
asubramanian-gatk	SNP	ti	func_cds	het	99.6530	99.6472	99.6589	31.5760	8474	30	8472	29	1	3.4483
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6530	99.7222	99.5839	69.2078	1436	4	1436	6	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6528	99.6528	99.6528	69.7320	574	2	574	2	2	100.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6527	99.7736	99.5322	54.5761	6170	14	6170	29	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6526	99.6524	99.6528	63.6057	860	3	861	3	2	66.6667
jli-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6524	99.7101	99.5947	36.6587	3440	10	3440	14	2	14.2857
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6524	99.3882	99.9179	31.7465	7310	45	7306	6	1	16.6667

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