PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 156 157 158 159 160 161 162 163 164 ... 1720 1721 » 7951-8000 / 86044 show all
egarrison-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6677	99.5048	99.8311	60.3522	10047	50	10048	17	14	82.3529
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6674	99.7924	99.5426	42.2165	6730	14	6747	31	2	6.4516
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6673	99.4468	99.8889	71.7685	5393	30	5393	6	6	100.0000
gduggal-bwafb	SNP	ti	func_cds	*	99.6673	99.9492	99.3869	27.6810	13780	7	13780	85	2	2.3529
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6673	99.8600	99.4754	57.8446	17826	25	17825	94	5	5.3192
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6672	99.8841	99.4512	37.3053	3446	4	3443	19	2	10.5263
rpoplin-dv42	SNP	ti	map_l100_m2_e1	homalt	99.6670	99.5404	99.7940	62.9692	18409	85	18410	38	36	94.7368
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6666	99.6190	99.7143	62.5668	1046	4	1047	3	3	100.0000
hfeng-pmm3	SNP	*	map_l100_m2_e1	*	99.6666	99.5946	99.7387	65.1913	74434	303	74423	195	31	15.8974
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6666	99.6812	99.6520	39.8884	3439	11	3436	12	2	16.6667
jli-custom	INDEL	I1_5	HG002complexvar	het	99.6665	99.4282	99.9059	56.5291	18085	104	18053	17	9	52.9412
ckim-gatk	INDEL	*	HG002complexvar	het	99.6665	99.5780	99.7552	57.8728	46017	195	45636	112	64	57.1429
rpoplin-dv42	SNP	ti	map_l100_m2_e0	homalt	99.6664	99.5412	99.7919	62.9736	18225	84	18226	38	36	94.7368
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6662	99.3697	99.9644	66.5145	16868	107	16868	6	6	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6662	99.3697	99.9644	66.5145	16868	107	16868	6	6	100.0000
hfeng-pmm3	SNP	ti	map_l125_m0_e0	homalt	99.6659	99.6437	99.6881	69.8765	4475	16	4475	14	5	35.7143
ltrigg-rtg1	SNP	ti	map_l125_m0_e0	homalt	99.6656	99.5324	99.7991	68.6301	4470	21	4470	9	9	100.0000
jmaeng-gatk	SNP	ti	*	het	99.6655	99.6418	99.6893	25.0371	1277299	4592	1277249	3981	127	3.1902
rpoplin-dv42	SNP	ti	map_l100_m1_e0	homalt	99.6655	99.5323	99.7990	60.4404	17876	84	17877	36	34	94.4444
hfeng-pmm3	SNP	*	map_l100_m2_e0	*	99.6651	99.5917	99.7386	65.1842	73662	302	73651	193	31	16.0622
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6651	99.7679	99.5625	58.6903	3869	9	3869	17	0	0.0000
bgallagher-sentieon	SNP	ti	map_l100_m0_e0	homalt	99.6648	99.4469	99.8837	59.2653	7731	43	7731	9	7	77.7778
jli-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6647	99.7834	99.5462	33.7248	4606	10	4607	21	2	9.5238
ltrigg-rtg1	SNP	*	func_cds	*	99.6647	99.8898	99.4405	22.8252	18130	20	18129	102	1	0.9804
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6646	99.3826	99.9483	59.5457	3863	24	3863	2	2	100.0000
jlack-gatk	INDEL	D1_5	*	homalt	99.6645	99.8651	99.4647	59.9060	48860	66	48867	263	260	98.8593
ltrigg-rtg2	SNP	*	map_l250_m2_e0	homalt	99.6642	99.4415	99.8878	85.5934	2671	15	2671	3	3	100.0000
ltrigg-rtg2	SNP	*	map_l125_m0_e0	homalt	99.6639	99.4041	99.9251	65.7800	6672	40	6672	5	4	80.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6636	99.5017	99.8260	39.5847	4593	23	4589	8	3	37.5000
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6636	99.8179	99.5098	78.3746	548	1	609	3	2	66.6667
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6632	99.5223	99.8044	57.7539	28125	135	28578	56	39	69.6429
bgallagher-sentieon	INDEL	I1_5	*	het	99.6628	99.6660	99.6596	60.0640	78777	264	78760	269	153	56.8773
hfeng-pmm2	SNP	tv	map_siren	*	99.6626	99.6995	99.6257	59.0414	45792	138	45784	172	23	13.3721
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6626	99.4266	99.8998	45.8345	3988	23	3988	4	0	0.0000
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6624	99.7383	99.5867	60.0529	16386	43	16385	68	18	26.4706
eyeh-varpipe	SNP	*	map_l100_m1_e0	hetalt	99.6622	100.0000	99.3266	65.7044	41	0	295	2	1	50.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.6621	99.8310	99.4938	54.7565	2954	5	2948	15	1	6.6667
hfeng-pmm3	SNP	*	map_l100_m1_e0	*	99.6620	99.5870	99.7371	63.4436	72104	299	72093	190	31	16.3158
hfeng-pmm3	INDEL	*	func_cds	*	99.6618	99.3258	100.0000	42.1121	442	3	444	0	0
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6618	99.7743	99.5495	35.0877	442	1	442	2	2	100.0000
ckim-gatk	SNP	*	func_cds	*	99.6618	99.8678	99.4567	31.5863	18126	24	18123	99	1	1.0101
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6618	99.7743	99.5495	35.0877	442	1	442	2	2	100.0000
egarrison-hhga	SNP	tv	map_l125_m0_e0	homalt	99.6615	99.4147	99.9095	69.6595	2208	13	2208	2	2	100.0000
eyeh-varpipe	SNP	tv	map_l125_m0_e0	homalt	99.6613	99.5948	99.7279	75.3135	2212	9	2199	6	2	33.3333
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6608	99.4733	99.8491	69.8452	2644	14	2646	4	3	75.0000
ltrigg-rtg2	SNP	ti	map_l250_m2_e1	homalt	99.6608	99.4921	99.8301	85.6923	1763	9	1763	3	3	100.0000
raldana-dualsentieon	SNP	tv	map_l150_m0_e0	homalt	99.6608	99.5482	99.7736	73.0800	1322	6	1322	3	1	33.3333
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6608	99.4733	99.8491	69.3074	2644	14	2646	4	2	50.0000
dgrover-gatk	SNP	*	map_siren	*	99.6607	99.6410	99.6805	56.6949	145703	525	145680	467	103	22.0557

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge