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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 155 156 157 158 159 160 161 162 163 ... 1720 1721 » 7901-7950 / 86044 show all
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6744	99.4583	99.8915	30.2044	918	5	921	1	1	100.0000
dgrover-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6743	99.8742	99.4753	60.5238	55561	70	55550	293	27	9.2150
hfeng-pmm3	SNP	ti	map_l100_m1_e0	*	99.6742	99.5848	99.7638	62.8483	47732	199	47725	113	21	18.5841
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.6741	99.7905	99.5579	54.7054	4286	9	4279	19	1	5.2632
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.6740	99.4939	99.8549	58.0900	1376	7	1376	2	1	50.0000
ckim-dragen	SNP	tv	map_l100_m2_e0	homalt	99.6739	99.5116	99.8367	60.2338	9169	45	9169	15	13	86.6667
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6736	99.4668	99.8812	64.0938	1679	9	1682	2	2	100.0000
ckim-dragen	SNP	tv	map_l100_m1_e0	homalt	99.6733	99.5134	99.8336	57.5832	8999	44	8999	15	13	86.6667
dgrover-gatk	SNP	tv	map_l100_m1_e0	homalt	99.6730	99.4360	99.9111	59.6774	8992	51	8992	8	5	62.5000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6728	100.0000	99.3478	70.2554	914	0	914	6	0	0.0000
dgrover-gatk	SNP	*	segdup	*	99.6727	99.8397	99.5063	90.5121	28022	45	28016	139	12	8.6331
cchapple-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6721	99.3464	100.0000	51.9682	1216	8	1208	0	0
hfeng-pmm1	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6721	99.3464	100.0000	64.9669	1216	8	1216	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6721	99.9315	99.4140	76.0962	21884	15	21884	129	128	99.2248
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6721	99.9543	99.3915	75.2467	21889	10	21889	134	133	99.2537
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.6720	99.5235	99.8208	51.0416	6684	32	6686	12	5	41.6667
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8540	71.2728	1367	7	1368	2	0	0.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8540	71.6062	1367	7	1368	2	0	0.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8540	71.8223	1367	7	1368	2	0	0.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6719	99.4905	99.8539	72.1465	1367	7	1367	2	0	0.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6717	99.6061	99.7373	45.9408	2276	9	2278	6	3	50.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6716	99.6463	99.6968	50.6032	11833	42	11838	36	19	52.7778
egarrison-hhga	SNP	ti	map_siren	*	99.6715	99.4669	99.8769	52.8764	99820	535	99821	123	54	43.9024
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6714	99.7807	99.5624	68.6019	910	2	910	4	3	75.0000
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6714	99.9177	99.4264	57.8940	6067	5	6067	35	34	97.1429
bgallagher-sentieon	SNP	*	map_l150_m1_e0	homalt	99.6712	99.4855	99.8575	68.3134	11215	58	11215	16	12	75.0000
bgallagher-sentieon	INDEL	I1_5	map_siren	homalt	99.6711	99.8350	99.5078	78.1149	1210	2	1213	6	4	66.6667
astatham-gatk	INDEL	I1_5	map_siren	homalt	99.6711	99.8350	99.5078	78.3135	1210	2	1213	6	4	66.6667
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6711	99.4530	99.8901	68.0141	909	5	909	1	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6711	99.6711	99.6711	66.8845	909	3	909	3	3	100.0000
jli-custom	INDEL	I1_5	map_siren	homalt	99.6709	99.8350	99.5074	76.9711	1210	2	1212	6	3	50.0000
hfeng-pmm2	INDEL	I1_5	map_siren	homalt	99.6707	99.7525	99.5892	76.9508	1209	3	1212	5	4	80.0000
hfeng-pmm3	SNP	tv	map_l150_m1_e0	homalt	99.6705	99.6452	99.6957	71.7215	3932	14	3932	12	4	33.3333
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6705	99.6705	99.6705	66.2895	4840	16	4840	16	13	81.2500
cchapple-custom	SNP	tv	*	het	99.6701	99.8702	99.4708	26.9512	590928	768	591553	3147	233	7.4039
eyeh-varpipe	SNP	tv	HG002complexvar	hetalt	99.6700	99.6774	99.6626	29.8422	309	1	3545	12	11	91.6667
jli-custom	SNP	tv	map_l150_m1_e0	homalt	99.6698	99.4425	99.8982	67.6388	3924	22	3924	4	4	100.0000
bgallagher-sentieon	INDEL	*	HG002complexvar	het	99.6698	99.5477	99.7922	57.6447	46003	209	45633	95	61	64.2105
cchapple-custom	SNP	*	func_cds	het	99.6697	99.9014	99.4391	30.1424	11150	11	11168	63	1	1.5873
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6697	99.3415	100.0000	79.4752	1056	7	1056	0	0
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6695	99.5598	99.7794	76.6162	1357	6	1357	3	0	0.0000
jmaeng-gatk	INDEL	I1_5	HG002complexvar	het	99.6695	99.5052	99.8344	58.2792	18099	90	18081	30	14	46.6667
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6691	99.7378	99.6004	35.1764	7228	19	7228	29	28	96.5517
gduggal-bwafb	SNP	tv	map_siren	homalt	99.6686	99.4490	99.8893	56.7363	17145	95	17145	19	11	57.8947
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6683	99.4621	99.8754	72.2887	2404	13	2404	3	3	100.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6683	99.5308	99.8063	75.9886	3606	17	3606	7	5	71.4286
ltrigg-rtg2	SNP	*	map_l250_m2_e1	homalt	99.6681	99.4481	99.8891	85.6712	2703	15	2703	3	3	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6680	99.4113	99.9261	41.1569	4053	24	4056	3	0	0.0000
jli-custom	SNP	*	map_l100_m0_e0	homalt	99.6679	99.4234	99.9135	58.5496	11553	67	11553	10	10	100.0000
qzeng-custom	SNP	tv	func_cds	*	99.6678	99.6797	99.6560	35.7311	4357	14	4345	15	0	0.0000

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