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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 153 154 155 156 157 158 159 160 161 ... 1720 1721 » 7801-7850 / 86044 show all
ltrigg-rtg2	INDEL	I1_5	segdup	homalt	99.6825	100.0000	99.3671	91.5023	473	0	471	3	3	100.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6825	99.8940	99.4720	72.6656	1884	2	1884	10	8	80.0000
ltrigg-rtg1	SNP	tv	map_l250_m2_e1	homalt	99.6822	99.4715	99.8938	87.1662	941	5	941	1	1	100.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6822	99.5584	99.8063	74.0988	3607	16	3607	7	3	42.8571
dgrover-gatk	SNP	tv	map_l100_m2_e1	homalt	99.6821	99.4517	99.9136	62.0828	9251	51	9251	8	5	62.5000
hfeng-pmm3	INDEL	D1_5	segdup	*	99.6820	99.4560	99.9091	93.9277	1097	6	1099	1	0	0.0000
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6820	99.5032	99.8615	74.2124	3605	18	3605	5	1	20.0000
ltrigg-rtg2	SNP	tv	map_l250_m2_e1	homalt	99.6819	99.3658	100.0000	85.4444	940	6	940	0	0
ckim-gatk	SNP	ti	*	*	99.6817	99.5154	99.8485	21.6609	2075404	10107	2075345	3148	170	5.4003
hfeng-pmm3	SNP	tv	map_l150_m2_e0	homalt	99.6815	99.6571	99.7060	73.9183	4069	14	4069	12	4	33.3333
egarrison-hhga	SNP	*	map_l150_m0_e0	homalt	99.6815	99.4864	99.8772	74.1921	4068	21	4068	5	5	100.0000
eyeh-varpipe	SNP	tv	map_l250_m2_e1	homalt	99.6815	99.5772	99.7861	89.7714	942	4	933	2	2	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.6813	99.7101	99.6525	34.1910	3440	10	3441	12	3	25.0000
jli-custom	SNP	tv	map_l150_m2_e0	homalt	99.6809	99.4612	99.9016	70.2372	4061	22	4061	4	4	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6807	99.5745	99.7872	69.0789	468	2	469	1	1	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6807	99.5745	99.7872	69.5003	468	2	469	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.6806	99.6087	99.7525	66.7490	4837	19	4837	12	10	83.3333
eyeh-varpipe	SNP	*	map_l100_m2_e1	hetalt	99.6805	100.0000	99.3631	67.6289	43	0	312	2	1	50.0000
asubramanian-gatk	SNP	ti	func_cds	*	99.6805	99.5721	99.7892	27.6472	13728	59	13726	29	1	3.4483
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6803	99.5094	99.8517	35.3111	4057	20	4039	6	4	66.6667
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6801	99.7532	99.6071	56.0538	27890	69	27889	110	11	10.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6801	99.9599	99.4019	61.3678	2493	1	2493	15	0	0.0000
ckim-gatk	SNP	*	*	het	99.6800	99.6561	99.7039	26.8036	1867144	6443	1867021	5544	194	3.4993
ndellapenna-hhga	SNP	*	map_l150_m1_e0	homalt	99.6799	99.4589	99.9020	69.8014	11212	61	11212	11	10	90.9091
cchapple-custom	INDEL	I1_5	segdup	homalt	99.6798	100.0000	99.3617	92.2211	473	0	467	3	3	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6797	99.5705	99.7890	51.2505	11824	51	11826	25	20	80.0000
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6797	99.7436	99.6160	62.2679	7001	18	7004	27	15	55.5556
rpoplin-dv42	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.6796	99.7755	99.5839	69.4549	6222	14	6222	26	19	73.0769
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6795	99.3610	100.0000	35.0731	311	2	311	0	0
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6795	99.3610	100.0000	35.3430	311	2	311	0	0
jli-custom	SNP	ti	HG002compoundhet	het	99.6793	99.7265	99.6321	39.4553	9479	26	9479	35	14	40.0000
ltrigg-rtg1	SNP	tv	map_l250_m2_e0	homalt	99.6791	99.4664	99.8928	87.0650	932	5	932	1	1	100.0000
dgrover-gatk	SNP	tv	map_l100_m2_e0	homalt	99.6791	99.4465	99.9128	62.0923	9163	51	9163	8	5	62.5000
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6790	99.4763	99.8825	56.1108	28112	148	28064	33	18	54.5455
hfeng-pmm2	SNP	*	map_siren	*	99.6789	99.6758	99.6819	56.1450	145754	474	145731	465	62	13.3333
ltrigg-rtg2	SNP	tv	map_l250_m2_e0	homalt	99.6788	99.3597	100.0000	85.3155	931	6	931	0	0
ndellapenna-hhga	SNP	ti	map_l150_m1_e0	homalt	99.6785	99.4404	99.9177	69.6369	7286	41	7286	6	6	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6785	100.0000	99.3590	84.3058	155	0	155	1	0	0.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6785	100.0000	99.3590	84.2105	155	0	155	1	0	0.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6785	100.0000	99.3590	84.2105	155	0	155	1	0	0.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6785	100.0000	99.3590	85.1570	155	0	155	1	0	0.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6785	100.0000	99.3590	84.8984	155	0	155	1	0	0.0000
eyeh-varpipe	SNP	tv	map_l250_m2_e0	homalt	99.6784	99.5731	99.7840	89.6709	933	4	924	2	2	100.0000
bgallagher-sentieon	SNP	*	map_l150_m2_e1	homalt	99.6781	99.4927	99.8642	70.7146	11767	60	11767	16	12	75.0000
hfeng-pmm2	SNP	tv	segdup	*	99.6780	99.8125	99.5439	91.3819	8516	16	8512	39	4	10.2564
dgrover-gatk	SNP	ti	segdup	*	99.6780	99.8413	99.5153	89.9275	19506	31	19504	95	6	6.3158
ckim-dragen	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6778	99.6209	99.7347	74.4322	33110	126	33088	88	54	61.3636
jli-custom	SNP	ti	map_l100_m0_e0	homalt	99.6776	99.4340	99.9224	57.9039	7730	44	7730	6	6	100.0000
eyeh-varpipe	SNP	*	map_l250_m0_e0	homalt	99.6776	99.6820	99.6732	93.5320	627	2	610	2	2	100.0000
gduggal-snapfb	SNP	ti	func_cds	het	99.6775	99.9530	99.4036	28.0582	8500	4	8500	51	1	1.9608

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