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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 148 149 150 151 152 153 154 155 156 ... 1720 1721 » 7551-7600 / 86044 show all
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.7151	99.5733	99.8573	47.3724	700	3	700	1	1	100.0000
jmaeng-gatk	INDEL	I1_5	*	homalt	99.7149	99.8444	99.5857	55.4032	60334	94	60340	251	245	97.6096
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.7147	99.4310	100.0000	46.1064	699	4	699	0	0
bgallagher-sentieon	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7144	99.8963	99.5331	54.5778	27930	29	27929	131	10	7.6336
bgallagher-sentieon	SNP	tv	HG002compoundhet	*	99.7142	99.7422	99.6862	48.7920	8900	23	8895	28	11	39.2857
jlack-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7138	100.0000	99.4293	53.4182	2439	0	2439	14	0	0.0000
hfeng-pmm3	SNP	ti	segdup	*	99.7137	99.8311	99.5965	88.9183	19504	33	19502	79	3	3.7975
ltrigg-rtg1	SNP	ti	map_l150_m2_e1	homalt	99.7136	99.5710	99.8566	72.6687	7660	33	7662	11	11	100.0000
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.6183	99.8088	64.2271	522	2	522	1	1	100.0000
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.6183	99.8088	66.4313	522	2	522	1	1	100.0000
hfeng-pmm2	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.5098	99.9180	66.6027	1218	6	1218	1	0	0.0000
raldana-dualsentieon	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.5423	99.8852	59.7783	1740	8	1740	2	1	50.0000
jli-custom	SNP	ti	map_l150_m2_e1	homalt	99.7134	99.5060	99.9217	69.9097	7655	38	7655	6	6	100.0000
jli-custom	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7133	99.4851	99.9425	62.4676	1739	9	1739	1	1	100.0000
ghariani-varprowl	SNP	ti	HG002complexvar	homalt	99.7133	99.9473	99.4805	19.5938	193359	102	193405	1010	705	69.8020
ckim-dragen	SNP	ti	map_siren	homalt	99.7132	99.4936	99.9338	47.4447	37724	192	37726	25	23	92.0000
raldana-dualsentieon	SNP	*	map_l150_m2_e0	homalt	99.7131	99.5213	99.9056	69.8863	11643	56	11643	11	8	72.7273
hfeng-pmm1	SNP	*	*	hetalt	99.7131	99.7704	99.6560	48.7962	869	2	869	3	3	100.0000
hfeng-pmm1	SNP	tv	*	hetalt	99.7131	99.7704	99.6560	48.7962	869	2	869	3	3	100.0000
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7130	99.7766	99.6495	46.4322	6254	14	6254	22	9	40.9091
eyeh-varpipe	SNP	tv	map_l100_m0_e0	homalt	99.7129	99.7140	99.7118	68.3997	3835	11	3806	11	3	27.2727
jli-custom	SNP	ti	map_l150_m1_e0	homalt	99.7128	99.5087	99.9178	67.3088	7291	36	7291	6	6	100.0000
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7127	99.6993	99.7261	53.8549	3647	11	3641	10	3	30.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7126	99.4764	99.9499	47.9937	3990	21	3990	2	0	0.0000
astatham-gatk	INDEL	I1_5	*	homalt	99.7125	99.8544	99.5710	55.1217	60340	88	60345	260	257	98.8462
cchapple-custom	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7125	99.6183	99.8069	55.4600	522	2	517	1	1	100.0000
ckim-gatk	INDEL	I1_5	*	homalt	99.7125	99.8428	99.5825	55.2232	60333	95	60339	253	249	98.4190
raldana-dualsentieon	SNP	*	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
raldana-dualsentieon	SNP	tv	*	hetalt	99.7125	99.5408	99.8848	38.3960	867	4	867	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7122	99.4260	100.0000	47.8270	2425	14	2425	0	0
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7119	99.4908	99.9340	54.5993	6057	31	6057	4	4	100.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7116	99.6705	99.7527	66.7352	4840	16	4840	12	10	83.3333
dgrover-gatk	SNP	*	map_l100_m2_e1	homalt	99.7116	99.4999	99.9241	60.6444	27657	139	27657	21	16	76.1905
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7116	99.6705	99.7527	66.8941	4840	16	4840	12	9	75.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7114	99.7110	99.7118	79.0838	345	1	346	1	1	100.0000
ckim-dragen	SNP	tv	*	het	99.7113	99.9417	99.4820	27.9772	591351	345	591544	3080	126	4.0909
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.7112	99.6472	99.7752	70.6918	6214	22	6214	14	12	85.7143
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.7111	99.6899	99.7323	69.3066	4822	15	4843	13	10	76.9231
ltrigg-rtg1	SNP	ti	map_l150_m2_e0	homalt	99.7107	99.5667	99.8552	72.6188	7583	33	7584	11	11	100.0000
jli-custom	SNP	ti	map_l150_m2_e0	homalt	99.7105	99.5011	99.9209	69.8737	7578	38	7578	6	6	100.0000
dgrover-gatk	SNP	*	map_l100_m1_e0	homalt	99.7105	99.5001	99.9219	58.2002	26868	135	26868	21	16	76.1905
dgrover-gatk	SNP	*	map_l100_m2_e0	homalt	99.7105	99.4986	99.9234	60.6643	27385	138	27385	21	16	76.1905
ltrigg-rtg1	SNP	ti	map_l100_m0_e0	homalt	99.7102	99.5884	99.8324	61.6545	7742	32	7742	13	13	100.0000
gduggal-bwafb	SNP	*	map_siren	homalt	99.7102	99.5014	99.9199	54.2074	54881	275	54881	44	25	56.8182
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7102	99.4704	99.9511	57.5377	16342	87	16340	8	1	12.5000
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7101	99.4220	100.0000	30.6569	1720	10	1710	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7101	99.4220	100.0000	73.1707	344	2	341	0	0
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7101	99.5369	99.8839	62.7379	3439	16	3442	4	4	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7101	100.0000	99.4220	81.3578	172	0	172	1	1	100.0000

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