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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7351-7400 / 86044 show all
ckim-vqsrSNPtvfunc_cds*
99.7367
99.6568
99.8166
38.6616
435615435580
0.0000
ckim-vqsrSNPtvfunc_cdshet
99.7366
99.7742
99.6990
44.6481
26516265080
0.0000
gduggal-bwafbSNPtvHG002complexvarhet
99.7366
99.7134
99.7598
23.4830
150302432150365362122
33.7017
gduggal-bwafbSNPti*het
99.7363
99.8649
99.6080
22.2231
1280165173212802845038382
7.5824
jli-customSNPtvmap_l125_m2_e1homalt
99.7361
99.5719
99.9009
65.9064
604826604865
83.3333
ckim-dragenSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7361
99.7595
99.7127
70.2512
62211562481814
77.7778
egarrison-hhgaSNPtvHG002complexvarhet
99.7360
99.5170
99.9560
21.2359
1500037281500236628
42.4242
ltrigg-rtg2SNPtimap_l100_m0_e0homalt
99.7358
99.5369
99.9354
58.2970
773836773855
100.0000
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.7358
99.5014
99.9714
60.2855
698435698121
50.0000
dgrover-gatkSNP*HG002compoundhethet
99.7355
99.7390
99.7320
46.0622
1414137141393824
63.1579
ckim-dragenSNP**het
99.7355
99.9519
99.5199
24.5349
187268690118730389035444
4.9142
bgallagher-sentieonSNPtimap_l125_m2_e0homalt
99.7354
99.5686
99.9028
65.6605
113094911309119
81.8182
asubramanian-gatkSNPtvfunc_cdshomalt
99.7352
99.4718
100.0000
25.3304
16959169500
ckim-vqsrSNPtvfunc_cdshomalt
99.7352
99.4718
100.0000
25.8206
16959169500
ltrigg-rtg1SNP*segduphomalt
99.7351
99.9348
99.5361
88.6997
107367107295050
100.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7350
99.7281
99.7420
30.1101
7335207346194
21.0526
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7349
99.8133
99.6566
54.0176
1015919101573530
85.7143
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7347
99.5374
99.9328
57.9303
163537616352114
36.3636
ltrigg-rtg2SNP*map_l150_m2_e0homalt
99.7345
99.5384
99.9314
70.4233
11645541164787
87.5000
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7343
99.6285
99.8404
58.9273
28155105281584520
44.4444
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7342
99.4993
99.9702
64.1818
16890851679353
60.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7342
99.4993
99.9702
64.1818
16890851679353
60.0000
rpoplin-dv42SNPtisegduphet
99.7339
99.7007
99.7671
89.8249
119943611992283
10.7143
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7338
99.6454
99.8224
41.5672
11244112422
100.0000
jli-customSNPtvmap_l125_m2_e0homalt
99.7336
99.5679
99.8999
65.8835
599126599165
83.3333
raldana-dualsentieonSNPtvmap_l150_m1_e0homalt
99.7335
99.5692
99.8983
67.6642
392917392942
50.0000
raldana-dualsentieonSNPtvmap_l150_m2_e1homalt
99.7335
99.5646
99.9029
70.1838
411618411642
50.0000
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
59.3514
374037421
50.0000
ndellapenna-hhgaSNP*map_l125_m1_e0homalt
99.7333
99.5504
99.9169
65.2026
1682976168291413
92.8571
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
59.7861
374037421
50.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
58.4530
374037421
50.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
59.3074
374037421
50.0000
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
59.4391
374037421
50.0000
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7332
99.6004
99.8664
53.4604
22439224331
33.3333
rpoplin-dv42SNPtvmap_sirenhomalt
99.7328
99.5998
99.8662
55.9755
1717169171692321
91.3043
jli-customSNP*HG002compoundhet*
99.7328
99.7599
99.7058
41.1267
2576062257577636
47.3684
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7328
99.4670
100.0000
48.0069
242613242600
astatham-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7327
99.4668
100.0000
64.1699
16799167900
ckim-dragenSNPtvHG002compoundhethet
99.7327
99.6362
99.8294
55.7255
465617468283
37.5000
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7326
99.7326
99.7326
58.2589
373137310
0.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7326
99.5995
99.8661
79.1457
14926149221
50.0000
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.7323
99.4661
100.0000
30.4021
13047129800
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7323
99.4660
100.0000
82.1364
14908149000
astatham-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.7323
99.4661
100.0000
34.5710
13047130400
jli-customINDELD1_5HG002complexvarhet
99.7322
99.5618
99.9033
54.7904
206749120667206
30.0000
ckim-dragenSNP*HG002compoundhethet
99.7322
99.6967
99.7677
46.4046
141354314173338
24.2424
ckim-dragenSNPtiHG002compoundhethet
99.7319
99.7265
99.7373
40.1998
9479269491255
20.0000
qzeng-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7317
99.7821
99.6812
62.4851
1007522100073221
65.6250
bgallagher-sentieonSNP*map_l125_m2_e1homalt
99.7315
99.5779
99.8856
66.0476
1745874174582015
75.0000
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.7314
99.6182
99.8449
68.2587
96553796551513
86.6667