PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 143 144 145 146 147 148 149 150 151 ... 1720 1721 » 7301-7350 / 86044 show all
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7413	99.9261	99.5572	74.4050	1352	1	1349	6	4	66.6667
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.7412	99.7085	99.7738	68.8882	3079	9	3088	7	6	85.7143
astatham-gatk	SNP	*	map_siren	homalt	99.7411	99.5377	99.9454	50.1425	54901	255	54892	30	26	86.6667
ltrigg-rtg1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7411	99.4835	100.0000	59.6808	963	5	960	0	0
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7409	99.6119	99.8703	78.8245	770	3	770	1	0	0.0000
ndellapenna-hhga	SNP	ti	segdup	homalt	99.7406	99.8934	99.5882	88.2312	7497	8	7497	31	31	100.0000
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7406	99.4825	100.0000	76.8652	769	4	769	0	0
ndellapenna-hhga	SNP	*	map_l125_m2_e0	homalt	99.7405	99.5626	99.9191	67.9668	17299	76	17299	14	13	92.8571
ltrigg-rtg2	SNP	tv	*	het	99.7405	99.8410	99.6402	19.4900	590763	941	590991	2134	60	2.8116
ltrigg-rtg2	SNP	ti	HG002compoundhet	hetalt	99.7403	99.4819	100.0000	21.4966	576	3	577	0	0
asubramanian-gatk	INDEL	D1_5	HG002complexvar	homalt	99.7403	99.6226	99.8582	60.0860	10558	40	10565	15	13	86.6667
bgallagher-sentieon	SNP	ti	HG002compoundhet	hetalt	99.7403	99.4819	100.0000	21.8453	576	3	576	0	0
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7401	99.6720	99.8083	54.5545	3646	12	3645	7	2	28.5714
ckim-gatk	SNP	*	HG002complexvar	het	99.7401	99.5255	99.9558	19.1024	463288	2209	463160	205	69	33.6585
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7400	99.6173	99.8629	52.8317	3644	14	3643	5	1	20.0000
hfeng-pmm1	SNP	*	segdup	*	99.7400	99.7934	99.6867	89.3409	28009	58	28003	88	11	12.5000
jpowers-varprowl	SNP	tv	*	homalt	99.7396	99.9576	99.5225	24.1122	376963	160	377038	1809	1197	66.1692
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7395	99.7766	99.7024	56.2348	14737	33	14739	44	17	38.6364
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7395	99.5954	99.8841	36.0267	1723	7	1724	2	2	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	68.9860	574	2	574	1	1	100.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	66.3743	574	2	574	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	69.1854	574	2	574	1	1	100.0000
eyeh-varpipe	SNP	*	map_l150_m0_e0	homalt	99.7393	99.7065	99.7720	78.7376	4077	12	3939	9	4	44.4444
ltrigg-rtg2	SNP	ti	func_cds	*	99.7392	99.8622	99.6165	20.8703	13768	19	13767	53	1	1.8868
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.4564	381	2	381	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.0516	381	2	381	0	0
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	82.6739	381	2	381	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.7872	381	2	381	0	0
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7381	99.9188	99.5581	52.7387	11075	9	10815	48	16	33.3333
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.7381	99.7754	99.7008	54.7087	1333	3	1333	4	1	25.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7380	99.8068	99.6692	75.6445	3616	7	3616	12	6	50.0000
egarrison-hhga	SNP	tv	segdup	homalt	99.7379	99.8765	99.5996	90.3915	3234	4	3234	13	13	100.0000
rpoplin-dv42	SNP	tv	segdup	homalt	99.7378	99.8456	99.6302	90.4939	3233	5	3233	12	12	100.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7378	99.5218	99.9547	55.5264	11031	53	11028	5	1	20.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7378	99.5812	99.8950	79.8902	951	4	951	1	0	0.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7378	99.5812	99.8950	80.4517	951	4	951	1	1	100.0000
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	homalt	99.7377	99.5724	99.9037	65.6841	11409	49	11409	11	9	81.8182
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7375	99.6412	99.8341	75.9622	3610	13	3610	6	3	50.0000
hfeng-pmm1	SNP	*	map_l100_m0_e0	homalt	99.7374	99.7074	99.7675	63.8562	11586	34	11586	27	10	37.0370
ltrigg-rtg2	SNP	*	map_l150_m2_e1	homalt	99.7374	99.5434	99.9321	70.4609	11773	54	11779	8	7	87.5000
ltrigg-rtg1	SNP	*	map_l100_m0_e0	homalt	99.7372	99.6299	99.8447	62.2918	11577	43	11575	18	15	83.3333
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.7372	99.6061	99.8685	48.0892	2276	9	2279	3	0	0.0000
ltrigg-rtg2	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7370	99.4951	99.9801	43.3493	10051	51	10045	2	1	50.0000
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	homalt	99.7370	99.5745	99.9001	63.0037	10998	47	10998	11	9	81.8182
ckim-dragen	INDEL	D1_5	HG002complexvar	het	99.7370	99.6292	99.8451	55.8027	20688	77	20632	32	11	34.3750
ckim-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7369	99.5048	99.9701	61.6836	10047	50	10047	3	3	100.0000
ltrigg-rtg2	SNP	ti	map_l125_m1_e0	homalt	99.7369	99.5292	99.9454	62.9489	10993	52	10993	6	6	100.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7367	99.6698	99.8037	67.8161	9660	32	9660	19	12	63.1579

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge