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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 141 142 143 144 145 146 147 148 149 ... 1720 1721 » 7201-7250 / 86044 show all
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7542	99.8360	99.6725	49.7429	2435	4	2435	8	0	0.0000
eyeh-varpipe	SNP	*	map_l250_m1_e0	homalt	99.7542	99.6752	99.8333	88.3918	2455	8	2396	4	4	100.0000
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7540	99.8860	99.6224	56.8960	7011	8	6859	26	11	42.3077
hfeng-pmm2	SNP	tv	HG002complexvar	het	99.7540	99.5389	99.9700	20.7785	150036	695	149957	45	8	17.7778
hfeng-pmm3	INDEL	I1_5	map_siren	homalt	99.7534	99.9175	99.5898	76.7011	1211	1	1214	5	3	60.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7534	99.6812	99.8257	39.7409	3439	11	3436	6	2	33.3333
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7531	99.6254	99.8811	52.9851	25264	95	25209	30	21	70.0000
ltrigg-rtg1	SNP	ti	map_l125_m2_e0	homalt	99.7531	99.6126	99.8940	67.9785	11314	44	11314	12	12	100.0000
jli-custom	SNP	ti	map_l125_m2_e0	homalt	99.7530	99.5774	99.9293	65.1271	11310	48	11310	8	8	100.0000
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7530	99.7694	99.7366	55.3284	6058	14	6058	16	16	100.0000
hfeng-pmm3	SNP	tv	map_l125_m1_e0	homalt	99.7525	99.7270	99.7780	67.2958	5844	16	5844	13	5	38.4615
ckim-gatk	INDEL	*	HG002complexvar	homalt	99.7525	99.8890	99.6164	57.3371	26997	30	27010	104	99	95.1923
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7522	99.8777	99.6270	52.6879	17156	21	16826	63	23	36.5079
hfeng-pmm3	SNP	*	map_l150_m2_e0	homalt	99.7521	99.7350	99.7691	73.4090	11668	31	11668	27	10	37.0370
hfeng-pmm1	SNP	*	map_l150_m1_e0	homalt	99.7516	99.7427	99.7604	71.3075	11244	29	11244	27	10	37.0370
ltrigg-rtg1	SNP	*	map_l150_m1_e0	homalt	99.7513	99.6186	99.8844	70.3814	11230	43	11232	13	13	100.0000
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7512	99.5449	99.9585	79.2911	2406	11	2406	1	0	0.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7512	99.5449	99.9585	78.7236	2406	11	2406	1	0	0.0000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7512	99.6892	99.8133	54.3984	1604	5	1604	3	2	66.6667
bgallagher-sentieon	INDEL	D1_5	*	het	99.7512	99.8059	99.6966	58.6998	87404	170	87413	266	136	51.1278
bgallagher-sentieon	INDEL	D1_5	*	homalt	99.7512	99.9530	99.5502	62.3527	48903	23	48908	221	219	99.0950
ltrigg-rtg2	SNP	*	map_l125_m1_e0	homalt	99.7511	99.5623	99.9406	63.1402	16831	74	16832	10	9	90.0000
ndellapenna-hhga	SNP	ti	map_l125_m2_e1	homalt	99.7508	99.5636	99.9387	67.6903	11408	50	11408	7	7	100.0000
hfeng-pmm2	SNP	*	map_l100_m0_e0	homalt	99.7504	99.7418	99.7590	63.9103	11590	30	11590	28	11	39.2857
cchapple-custom	INDEL	D1_5	*	homalt	99.7503	99.8385	99.6622	57.7109	48847	79	48389	164	151	92.0732
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7501	99.8753	99.6251	50.1743	4006	5	3986	15	1	6.6667
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7497	99.8706	99.6290	54.7353	6176	8	6176	23	0	0.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7495	99.7934	99.7056	64.6549	966	2	1016	3	3	100.0000
ltrigg-rtg2	INDEL	I1_5	*	homalt	99.7495	99.5797	99.9200	48.8836	60173	254	59955	48	38	79.1667
rpoplin-dv42	SNP	tv	HG002compoundhet	homalt	99.7491	99.8229	99.6753	42.8668	3382	6	3377	11	9	81.8182
ltrigg-rtg2	SNP	*	segdup	homalt	99.7490	99.9628	99.5362	88.2598	10739	4	10731	50	50	100.0000
astatham-gatk	SNP	ti	map_siren	homalt	99.7489	99.5437	99.9550	48.8366	37743	173	37737	17	16	94.1176
rpoplin-dv42	SNP	*	segdup	*	99.7488	99.7506	99.7470	89.9398	27997	70	27991	71	31	43.6620
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7487	99.4987	100.0000	63.3764	397	2	397	0	0
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7486	99.5235	99.9748	31.2218	3968	19	3962	1	0	0.0000
jli-custom	SNP	*	map_l125_m2_e1	homalt	99.7486	99.5779	99.9199	65.4177	17458	74	17458	14	13	92.8571
ndellapenna-hhga	SNP	ti	map_l125_m2_e0	homalt	99.7486	99.5598	99.9381	67.6520	11308	50	11308	7	7	100.0000
eyeh-varpipe	SNP	*	map_l125_m2_e1	hetalt	99.7481	100.0000	99.4975	71.0756	30	0	198	1	0	0.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7479	99.8558	99.6403	66.1800	1385	2	1385	5	0	0.0000
dgrover-gatk	SNP	tv	HG002compoundhet	*	99.7478	99.7647	99.7310	49.0520	8902	21	8897	24	15	62.5000
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7474	99.9277	99.5677	58.0918	1382	1	1382	6	0	0.0000
ckim-vqsr	SNP	ti	func_cds	het	99.7473	99.8119	99.6828	33.7510	8488	16	8486	27	0	0.0000
ndellapenna-hhga	SNP	*	HG002complexvar	het	99.7473	99.5353	99.9601	18.3091	463334	2163	463353	185	79	42.7027
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7471	99.5042	99.9911	53.7923	11240	56	11209	1	1	100.0000
ckim-vqsr	INDEL	*	HG002complexvar	homalt	99.7470	99.8705	99.6237	57.3434	26992	35	27005	102	98	96.0784
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7468	99.7171	99.7766	54.5091	6697	19	6699	15	8	53.3333
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7466	99.5860	99.9077	57.3042	28143	117	28146	26	19	73.0769
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7466	99.8734	99.6200	55.6834	1578	2	1573	6	1	16.6667
ckim-dragen	SNP	ti	*	het	99.7466	99.9566	99.5375	22.8315	1281335	556	1281494	5955	318	5.3401
ltrigg-rtg1	SNP	ti	func_cds	*	99.7465	99.8912	99.6022	21.3270	13772	15	13771	55	1	1.8182

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