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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 138 139 140 141 142 143 144 145 146 ... 1720 1721 » 7051-7100 / 86044 show all
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7691	99.7171	99.8211	53.8271	6697	19	6696	12	7	58.3333
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7691	99.9184	99.6202	33.3544	7349	6	7345	28	3	10.7143
raldana-dualsentieon	SNP	*	map_l125_m1_e0	homalt	99.7690	99.6273	99.9110	62.5841	16842	63	16842	15	11	73.3333
egarrison-hhga	SNP	*	map_l150_m1_e0	homalt	99.7690	99.6274	99.9110	70.9129	11231	42	11231	10	10	100.0000
ndellapenna-hhga	SNP	ti	HG002complexvar	het	99.7687	99.5752	99.9630	16.8677	313429	1337	313430	116	49	42.2414
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7686	99.6532	99.8842	35.8231	1724	6	1725	2	2	100.0000
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7686	99.5382	100.0000	50.6863	10131	47	10095	0	0
raldana-dualsentieon	SNP	ti	map_l125_m2_e1	homalt	99.7684	99.6160	99.9212	64.9891	11414	44	11414	9	8	88.8889
hfeng-pmm3	SNP	ti	map_l100_m0_e0	homalt	99.7684	99.7299	99.8069	62.9000	7753	21	7753	15	6	40.0000
rpoplin-dv42	SNP	*	HG002compoundhet	homalt	99.7682	99.8331	99.7035	35.1268	10764	18	10759	32	29	90.6250
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7680	99.5658	99.9709	62.5612	3440	15	3440	1	1	100.0000
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7677	99.7111	99.8244	68.3834	9664	28	9664	17	12	70.5882
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7677	99.8606	99.6750	47.8198	2149	3	2147	7	7	100.0000
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7675	99.8416	99.6935	39.2563	10715	17	10732	33	4	12.1212
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.7675	99.7915	99.7435	70.0911	6223	13	6223	16	12	75.0000
bgallagher-sentieon	SNP	*	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	22.4231	858	4	858	0	0
bgallagher-sentieon	SNP	tv	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	22.4231	858	4	858	0	0
astatham-gatk	SNP	tv	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	22.4932	858	4	858	0	0
astatham-gatk	SNP	*	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	22.4932	858	4	858	0	0
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7674	99.6720	99.8630	53.6272	3646	12	3645	5	1	20.0000
raldana-dualsentieon	SNP	*	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	22.0708	858	4	858	0	0
raldana-dualsentieon	SNP	tv	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	22.0708	858	4	858	0	0
ltrigg-rtg2	SNP	*	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	21.7668	858	4	859	0	0
ltrigg-rtg2	SNP	tv	HG002compoundhet	hetalt	99.7674	99.5360	100.0000	21.7668	858	4	859	0	0
hfeng-pmm3	SNP	*	map_siren	*	99.7673	99.6957	99.8390	54.1028	145783	445	145760	235	40	17.0213
egarrison-hhga	SNP	tv	map_l150_m2_e0	homalt	99.7670	99.6081	99.9263	73.5886	4067	16	4067	3	3	100.0000
hfeng-pmm2	INDEL	I1_5	*	homalt	99.7668	99.8262	99.7075	52.8322	60323	105	60327	177	174	98.3051
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7668	99.5543	99.9801	61.8690	10052	45	10052	2	2	100.0000
gduggal-bwafb	SNP	*	HG002complexvar	het	99.7664	99.7319	99.8010	20.1804	464252	1248	464384	926	324	34.9892
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.7664	100.0000	99.5338	39.4410	2138	0	2135	10	2	20.0000
raldana-dualsentieon	SNP	ti	map_l125_m2_e0	homalt	99.7663	99.6126	99.9205	64.9616	11314	44	11314	9	8	88.8889
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7661	99.8597	99.6727	76.2860	2135	3	2132	7	1	14.2857
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7660	99.5995	99.9330	79.6677	1492	6	1492	1	1	100.0000
hfeng-pmm2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7660	99.5995	99.9330	82.9644	1492	6	1492	1	0	0.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7660	99.6556	99.8767	49.4516	4051	14	4051	5	1	20.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7660	99.5995	99.9330	79.8733	1492	6	1492	1	1	100.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7660	99.5995	99.9330	82.3251	1492	6	1492	1	0	0.0000
ltrigg-rtg2	SNP	tv	map_l100_m0_e0	homalt	99.7656	99.6100	99.9217	59.8070	3831	15	3829	3	1	33.3333
hfeng-pmm2	SNP	*	map_l150_m1_e0	homalt	99.7650	99.7782	99.7517	71.3283	11248	25	11248	28	11	39.2857
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.1188	849	1	849	3	3	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.2307	849	1	849	3	3	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.0626	849	1	849	3	3	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.2307	849	1	849	3	3	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7647	99.7647	99.7647	48.5783	848	2	848	2	2	100.0000
raldana-dualsentieon	SNP	tv	HG002complexvar	het	99.7643	99.5575	99.9720	20.9789	150064	667	149985	42	9	21.4286
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7642	99.5294	100.0000	48.4461	846	4	846	0	0
ckim-vqsr	SNP	ti	func_cds	*	99.7642	99.7244	99.8040	29.1716	13749	38	13747	27	0	0.0000
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7641	99.8350	99.6932	57.1024	10893	18	10724	33	14	42.4242
jlack-gatk	SNP	tv	HG002compoundhet	homalt	99.7638	99.8229	99.7048	42.2900	3382	6	3377	10	9	90.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7636	100.0000	99.5283	45.3608	211	0	211	1	0	0.0000

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