PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 136 137 138 139 140 141 142 143 144 ... 1720 1721 » 6951-7000 / 86044 show all
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7788	99.5931	99.9652	63.6860	11505	47	11505	4	3	75.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7788	99.5931	99.9652	63.6860	11505	47	11505	4	3	75.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7788	100.0000	99.5585	74.0995	1353	0	1353	6	4	66.6667
asubramanian-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7788	99.8734	99.6843	54.0070	1578	2	1579	5	0	0.0000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7788	100.0000	99.5585	73.7137	1353	0	1353	6	5	83.3333
eyeh-varpipe	SNP	tv	map_l150_m2_e0	homalt	99.7787	99.7306	99.8269	76.3785	4072	11	4037	7	3	42.8571
bgallagher-sentieon	SNP	tv	map_l100_m1_e0	homalt	99.7786	99.6572	99.9002	59.2105	9012	31	9012	9	6	66.6667
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7785	99.6681	99.8891	70.9180	5405	18	5405	6	5	83.3333
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7785	99.6681	99.8891	70.9180	5405	18	5405	6	5	83.3333
ltrigg-rtg1	INDEL	*	func_cds	homalt	99.7783	99.5575	100.0000	30.7692	225	1	225	0	0
ltrigg-rtg2	INDEL	*	func_cds	homalt	99.7783	99.5575	100.0000	29.6875	225	1	225	0	0
hfeng-pmm2	SNP	tv	map_l125_m1_e0	homalt	99.7782	99.7952	99.7612	67.4839	5848	12	5848	14	5	35.7143
hfeng-pmm1	INDEL	*	HG002complexvar	homalt	99.7782	99.8372	99.7192	55.9241	26983	44	26991	76	70	92.1053
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.4847	1124	4	1124	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.5727	1124	4	1124	1	1	100.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9481	6070	2	6070	25	24	96.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7781	99.6454	99.9111	42.6020	1124	4	1124	1	1	100.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9684	6070	2	6070	25	24	96.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9506	99.6061	57.9561	6069	3	6069	24	23	95.8333
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7780	99.7214	99.8347	68.2340	9665	27	9665	16	13	81.2500
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.9264	1123	5	1123	0	0
ltrigg-rtg1	SNP	*	map_l125_m1_e0	homalt	99.7779	99.6510	99.9051	65.6341	16846	59	16847	16	16	100.0000
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	51.3978	1123	5	1130	0	0
ltrigg-rtg2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7779	99.5567	100.0000	49.8447	1123	5	1130	0	0
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7778	99.5565	100.0000	68.6843	1347	6	1340	0	0
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.7778	99.5565	100.0000	70.0067	1347	6	1341	0	0
ltrigg-rtg2	SNP	tv	map_l125_m1_e0	homalt	99.7778	99.6246	99.9315	63.2977	5838	22	5839	4	3	75.0000
jlack-gatk	SNP	ti	*	*	99.7777	99.9393	99.6165	21.7408	2084246	1265	2084182	8024	364	4.5364
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7777	99.7261	99.8294	60.1055	16384	45	16383	28	4	14.2857
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7776	99.5561	100.0000	29.2802	2467	11	2466	0	0
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7775	99.6287	99.9267	58.5881	16368	61	16366	12	1	8.3333
egarrison-hhga	SNP	*	map_l150_m2_e0	homalt	99.7775	99.6410	99.9143	73.3265	11657	42	11657	10	10	100.0000
ckim-vqsr	SNP	*	func_cds	homalt	99.7774	99.5558	100.0000	21.6155	6948	31	6948	0	0
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7774	99.7208	99.8342	53.5684	6071	17	6021	10	8	80.0000
rpoplin-dv42	SNP	ti	segdup	*	99.7773	99.7799	99.7748	89.3733	19494	43	19492	44	19	43.1818
eyeh-varpipe	SNP	*	map_l250_m2_e1	homalt	99.7772	99.7057	99.8489	89.2201	2710	8	2643	4	4	100.0000
rpoplin-dv42	SNP	ti	HG002compoundhet	homalt	99.7770	99.8377	99.7163	30.8389	7382	12	7382	21	20	95.2381
dgrover-gatk	INDEL	*	HG002complexvar	homalt	99.7765	99.9223	99.6312	57.3581	27006	21	27016	100	96	96.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7764	99.6650	99.8881	47.1210	6247	21	6247	7	3	42.8571
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7763	99.6011	99.9520	41.2692	6243	25	6253	3	3	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7762	99.6141	99.9389	56.2917	14713	57	14715	9	1	11.1111
hfeng-pmm2	SNP	*	map_l150_m2_e1	homalt	99.7760	99.7886	99.7633	73.5353	11802	25	11802	28	11	39.2857
egarrison-hhga	SNP	*	map_l100_m0_e0	homalt	99.7759	99.6299	99.9223	61.7548	11577	43	11577	9	8	88.8889
ckim-gatk	INDEL	D1_5	HG002complexvar	het	99.7759	99.7111	99.8409	56.3066	20705	60	20710	33	15	45.4545
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.4624	443	0	443	2	2	100.0000
hfeng-pmm1	SNP	ti	map_l150_m1_e0	homalt	99.7748	99.7543	99.7952	71.0227	7309	18	7309	15	6	40.0000
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	33.1832	443	0	443	2	2	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.6549	443	0	443	2	2	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7748	100.0000	99.5506	34.7507	443	0	443	2	2	100.0000
astatham-gatk	INDEL	*	HG002complexvar	homalt	99.7747	99.9075	99.6422	57.3610	27002	25	27012	97	94	96.9072

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge