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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 131 132 133 134 135 136 137 138 139 ... 1720 1721 » 6701-6750 / 86044 show all
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8014	99.7293	99.8736	52.3918	11054	30	11063	14	9	64.2857
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8009	99.9637	99.6386	38.4564	2757	1	2757	10	2	20.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8006	99.6609	99.9407	54.5675	25273	86	25275	15	11	73.3333
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8006	99.8255	99.7757	49.8187	4004	7	4004	9	1	11.1111
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8006	99.8575	99.7437	62.4217	7009	10	7005	18	3	16.6667
ltrigg-rtg1	SNP	ti	map_l100_m2_e0	homalt	99.8005	99.7214	99.8796	61.9278	18258	51	18258	22	22	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8004	99.7008	99.9001	56.9199	6998	21	7003	7	4	57.1429
jli-custom	SNP	ti	map_l100_m2_e0	homalt	99.8004	99.6614	99.9398	59.0453	18247	62	18247	11	11	100.0000
cchapple-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8004	99.7947	99.8062	63.2740	486	1	515	1	1	100.0000
cchapple-custom	SNP	*	HG002complexvar	*	99.8003	99.6796	99.9214	18.6735	751964	2417	749599	590	426	72.2034
hfeng-pmm3	SNP	*	map_l125_m2_e1	homalt	99.8003	99.7775	99.8231	68.9786	17493	39	17493	31	13	41.9355
egarrison-hhga	SNP	ti	map_l100_m0_e0	homalt	99.8003	99.6656	99.9355	61.1047	7748	26	7748	5	5	100.0000
egarrison-hhga	SNP	ti	segdup	homalt	99.8003	99.9067	99.6942	88.4424	7498	7	7498	23	23	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8002	99.6012	100.0000	36.4268	2747	11	2747	0	0
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8000	99.6479	99.9525	54.9426	14718	52	14720	7	1	14.2857
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7998	99.9198	99.6800	62.5636	2492	2	2492	8	0	0.0000
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7998	99.6004	100.0000	54.6227	2243	9	2243	0	0
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7997	99.7140	99.8855	65.5220	1743	5	1745	2	1	50.0000
jli-custom	SNP	ti	map_l100_m2_e1	homalt	99.7997	99.6593	99.9404	59.0260	18431	63	18431	11	11	100.0000
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7995	99.6662	99.9331	80.2093	1493	5	1493	1	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7995	99.6294	99.9702	32.6604	6720	25	6703	2	1	50.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7995	99.6662	99.9331	79.6097	1493	5	1493	1	1	100.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7994	99.7475	99.8514	49.4629	6716	17	6718	10	6	60.0000
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7989	99.7078	99.8902	34.3036	2730	8	2728	3	1	33.3333
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7987	99.8821	99.7155	54.3488	10166	12	10164	29	24	82.7586
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7987	99.5982	100.0000	27.0777	2727	11	2720	0	0
hfeng-pmm3	SNP	*	map_l125_m2_e0	homalt	99.7985	99.7755	99.8215	68.9465	17336	39	17336	31	13	41.9355
jli-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7984	99.8789	99.7181	29.8389	2475	3	2476	7	0	0.0000
ckim-dragen	SNP	tv	HG002compoundhet	*	99.7984	99.7422	99.8546	49.3913	8900	23	8925	13	8	61.5385
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7984	99.9193	99.6778	30.7392	2476	2	2475	8	0	0.0000
astatham-gatk	SNP	*	func_cds	het	99.7982	99.6864	99.9102	26.1346	11126	35	11123	10	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7975	99.7110	99.8843	36.2126	1725	5	1726	2	2	100.0000
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7972	99.8841	99.7104	37.7838	3446	4	3443	10	2	20.0000
ltrigg-rtg1	SNP	tv	HG002complexvar	het	99.7971	99.6716	99.9230	21.1569	150239	495	150457	116	36	31.0345
ltrigg-rtg1	SNP	tv	map_l125_m0_e0	homalt	99.7971	99.6398	99.9548	70.1295	2213	8	2213	1	1	100.0000
ndellapenna-hhga	SNP	ti	map_l100_m2_e1	homalt	99.7970	99.6756	99.9187	61.7788	18434	60	18434	15	15	100.0000
ckim-vqsr	INDEL	D1_5	*	homalt	99.7969	99.9203	99.6738	62.4858	48887	39	48894	160	157	98.1250
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7968	99.6842	99.9096	55.6842	11049	35	11049	10	7	70.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7968	99.7563	99.8374	54.8306	14734	36	14736	24	17	70.8333
ltrigg-rtg1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7967	99.6732	99.9204	57.8106	10064	33	10047	8	2	25.0000
hfeng-pmm3	INDEL	*	HG002complexvar	homalt	99.7967	99.8594	99.7340	55.8371	26989	38	26999	72	66	91.6667
jli-custom	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6548	99.9386	56.4067	17898	62	17898	11	11	100.0000
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6659	99.9274	59.1233	17900	60	17900	13	13	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7964	99.6289	99.9645	66.6982	16912	63	16912	6	5	83.3333
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7964	99.6289	99.9645	66.6982	16912	63	16912	6	5	83.3333
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7964	99.8426	99.7503	54.7629	27915	44	27963	70	23	32.8571
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7960	99.6623	99.9299	57.3191	17119	58	17115	12	5	41.6667
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7960	99.6105	99.9822	54.2557	11252	44	11220	2	2	100.0000
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7960	99.6973	99.8950	55.4424	17125	52	17126	18	14	77.7778
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7955	99.7728	99.8183	42.2613	2196	5	2197	4	3	75.0000

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