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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 126 127 128 129 130 131 132 133 134 ... 1720 1721 » 6451-6500 / 86044 show all
hfeng-pmm3	SNP	tv	map_l100_m1_e0	homalt	99.8285	99.8010	99.8562	62.3809	9025	18	9025	13	5	38.4615
ltrigg-rtg1	SNP	tv	*	*	99.8285	99.8863	99.7709	19.9654	968593	1103	968859	2225	103	4.6292
ltrigg-rtg2	SNP	tv	*	*	99.8284	99.8825	99.7743	19.4672	968557	1139	968810	2192	110	5.0183
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8284	99.7474	99.9096	58.5102	11056	28	11052	10	4	40.0000
ltrigg-rtg2	SNP	tv	map_l100_m1_e0	homalt	99.8284	99.7125	99.9446	58.6136	9017	26	9016	5	3	60.0000
egarrison-hhga	SNP	tv	map_l100_m1_e0	homalt	99.8284	99.7235	99.9335	62.1365	9018	25	9018	6	5	83.3333
astatham-gatk	SNP	tv	func_cds	*	99.8283	99.7483	99.9083	29.1951	4360	11	4359	4	0	0.0000
hfeng-pmm2	SNP	ti	map_l125_m2_e0	homalt	99.8283	99.8239	99.8327	68.6045	11338	20	11338	19	9	47.3684
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8282	99.7547	99.9018	44.3519	4067	10	4070	4	1	25.0000
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8282	99.7547	99.9018	44.2986	4067	10	4070	4	1	25.0000
hfeng-pmm2	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	47.9821	580	2	580	0	0
dgrover-gatk	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	41.2361	580	2	580	0	0
astatham-gatk	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	39.9586	580	2	580	0	0
ltrigg-rtg2	SNP	tv	map_l100_m2_e1	homalt	99.8278	99.7097	99.9461	61.3020	9275	27	9274	5	3	60.0000
jli-custom	SNP	*	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	*	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
jli-custom	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	43.3225	869	2	869	1	1	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8276	99.7048	99.9507	44.3071	4053	12	4053	2	2	100.0000
eyeh-varpipe	SNP	ti	map_l250_m2_e0	homalt	99.8276	99.7713	99.8839	88.9360	1745	4	1721	2	2	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8275	99.6556	100.0000	44.5296	4051	14	4051	0	0
dgrover-gatk	SNP	*	*	hetalt	99.8275	99.6556	100.0000	41.6667	868	3	868	0	0
dgrover-gatk	SNP	tv	*	hetalt	99.8275	99.6556	100.0000	41.6667	868	3	868	0	0
cchapple-custom	SNP	*	HG002complexvar	homalt	99.8273	99.6680	99.9871	18.5601	287616	958	286343	37	32	86.4865
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8273	99.7901	99.8645	55.6157	14739	31	14740	20	5	25.0000
dgrover-gatk	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.2372	577	2	577	0	0
raldana-dualsentieon	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	21.4966	577	2	577	0	0
jli-custom	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.4462	577	2	577	0	0
hfeng-pmm1	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.5503	577	2	577	0	0
hfeng-pmm3	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.4462	577	2	577	0	0
hfeng-pmm2	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.7577	577	2	577	0	0
astatham-gatk	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	21.9215	577	2	577	0	0
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8269	99.8611	99.7927	69.0150	1438	2	1444	3	2	66.6667
ckim-dragen	SNP	*	*	*	99.8268	99.9524	99.7015	21.8489	3053166	1453	3053731	9143	533	5.8296
jli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8267	99.9315	99.7221	75.0916	21884	15	21888	61	59	96.7213
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8263	99.7319	99.9210	54.5963	25291	68	25293	20	15	75.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8263	99.7261	99.9268	57.6141	16384	45	16382	12	5	41.6667
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8263	99.7917	99.8610	69.1268	1437	3	1437	2	1	50.0000
eyeh-varpipe	SNP	tv	map_l125_m2_e1	homalt	99.8263	99.7860	99.8666	72.2636	6061	13	5990	8	4	50.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8261	99.6816	99.9710	63.3120	3444	11	3444	1	1	100.0000
ltrigg-rtg2	SNP	tv	map_l100_m2_e0	homalt	99.8261	99.7070	99.9456	61.2864	9187	27	9186	5	3	60.0000
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8261	99.6816	99.9710	63.0365	3444	11	3444	1	0	0.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8260	99.6527	100.0000	62.8065	3443	12	3443	0	0
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8260	99.7054	99.9469	65.8244	16925	50	16925	9	8	88.8889
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8260	99.7054	99.9469	65.8244	16925	50	16925	9	8	88.8889
gduggal-bwafb	SNP	*	HG002compoundhet	hetalt	99.8259	99.7680	99.8839	24.0741	860	2	860	1	1	100.0000
gduggal-bwafb	SNP	tv	HG002compoundhet	hetalt	99.8259	99.7680	99.8839	24.0741	860	2	860	1	1	100.0000
raldana-dualsentieon	SNP	*	map_l100_m1_e0	homalt	99.8258	99.7223	99.9295	56.9722	26928	75	26928	19	15	78.9474
ndellapenna-hhga	SNP	*	map_siren	homalt	99.8258	99.7135	99.9382	52.6378	54998	158	54999	34	30	88.2353
ltrigg-rtg1	SNP	*	HG002compoundhet	hetalt	99.8257	99.6520	100.0000	21.3175	859	3	860	0	0

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