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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
6401-6450 / 86044 show all
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8363
99.9065
99.7662
76.2965
21362213451
20.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8362
99.8597
99.8128
76.4258
21353213341
25.0000
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8361
99.8770
99.7952
51.6436
24363243750
0.0000
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8361
99.7661
99.9062
74.5708
21335213121
50.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8360
99.8906
99.7814
68.9936
913191321
50.0000
ckim-dragenSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8358
99.8591
99.8124
64.8592
2763939276735216
30.7692
ltrigg-rtg2SNP*HG002complexvarhet
99.8358
99.7414
99.9305
18.3888
464296120446451532394
29.1022
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8356
99.8174
99.8539
32.2109
27335273443
75.0000
cchapple-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8352
99.9180
99.7526
51.8658
24372241961
16.6667
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8349
99.7617
99.9082
57.3447
108852610888106
60.0000
cchapple-customSNPtiHG002complexvarhomalt
99.8348
99.6852
99.9849
17.4009
1928546091921842925
86.2069
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8348
99.6884
99.9816
59.7111
10877341087421
50.0000
bgallagher-sentieonSNP*func_cdshet
99.8344
99.9731
99.6961
26.0085
11158311155340
0.0000
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.8342
99.6690
100.0000
72.9599
24098240900
jlack-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8341
99.8836
99.7848
57.0872
171572017153378
21.6216
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8339
99.7418
99.9261
75.6588
540914540942
50.0000
hfeng-pmm1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8339
99.7418
99.9261
75.6588
540914540942
50.0000
cchapple-customSNPti*het
99.8339
99.8795
99.7883
21.7295
1280346154512803842716443
16.3108
ckim-dragenSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8338
99.8720
99.7956
30.8168
39015390584
50.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
eyeh-varpipeSNP*map_l150_m1_e0homalt
99.8338
99.7871
99.8804
73.5129
112492410861138
61.5385
hfeng-pmm3SNPtvmap_l100_m2_e1homalt
99.8333
99.8065
99.8602
64.7574
9284189284135
38.4615
egarrison-hhgaSNPtvmap_l100_m2_e1homalt
99.8332
99.7312
99.9354
64.6456
927725927765
83.3333
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.8328
99.6662
100.0000
79.7916
14935149300
ckim-dragenSNPti**
99.8327
99.9538
99.7120
20.2602
208454796420848166022378
6.2770
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8325
99.9226
99.7426
60.4661
387533875100
0.0000
bgallagher-sentieonSNPtv*het
99.8318
99.9594
99.7045
23.0898
591456240591385175353
3.0234
jli-customINDEL*HG002complexvarhomalt
99.8318
99.8964
99.7673
56.4104
2699928270076357
90.4762
hfeng-pmm3SNPtvmap_l100_m2_e0homalt
99.8317
99.8046
99.8588
64.7570
9196189196135
38.4615
egarrison-hhgaSNPtvmap_l100_m2_e0homalt
99.8316
99.7287
99.9347
64.6441
918925918965
83.3333
eyeh-varpipeSNPtimap_l125_m0_e0homalt
99.8314
99.7996
99.8632
71.9880
44829437963
50.0000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8311
99.7438
99.9184
52.5299
171334417145149
64.2857
ndellapenna-hhgaSNPtv*het
99.8309
99.7335
99.9285
20.7977
590119157759013842245
10.6635
raldana-dualsentieonSNP*map_l100_m2_e1homalt
99.8307
99.7302
99.9315
59.5367
2772175277211915
78.9474
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8303
99.7434
99.9174
59.7828
10883281088195
55.5556
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8303
99.7319
99.9289
55.1102
2529168252941812
66.6667
raldana-dualsentieonSNP*func_cdshet
99.8299
99.9462
99.7139
24.9799
11155611152320
0.0000
eyeh-varpipeSNPtimap_l250_m2_e1homalt
99.8298
99.7743
99.8854
88.9822
17684174322
100.0000
hfeng-pmm2SNPtimap_l125_m2_e1homalt
99.8298
99.8254
99.8342
68.6316
114382011438199
47.3684
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8292
99.6738
99.9851
35.1779
672322672311
100.0000
jpowers-varprowlSNP**homalt
99.8292
99.9606
99.6981
20.3193
1179696465117982235732211
61.8808
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8292
99.6590
100.0000
35.1158
672223672200
raldana-dualsentieonSNP*map_l100_m2_e0homalt
99.8291
99.7275
99.9308
59.5568
2744875274481915
78.9474
hfeng-pmm3SNP*HG002complexvarhet
99.8290
99.6758
99.9825
18.2080
46398815094638598116
19.7531
ndellapenna-hhgaSNPtvmap_sirenhomalt
99.8287
99.7274
99.9303
55.1755
1719347171931210
83.3333
bgallagher-sentieonSNPtvfunc_cds*
99.8287
100.0000
99.6579
29.0453
437104370150
0.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.8285
99.6575
100.0000
18.3473
582258300
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.8285
99.6575
100.0000
18.1180
582258300
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.8285
99.6575
100.0000
18.5754
582258300