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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
6351-6400 / 86044 show all
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8435
99.7712
99.9160
32.7499
13083119011
100.0000
ltrigg-rtg1SNPtvmap_l125_m2_e1homalt
99.8435
99.7530
99.9341
68.3791
605915606544
100.0000
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8432
99.7787
99.9077
76.2675
541112541153
60.0000
hfeng-pmm2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8432
99.7787
99.9077
76.2675
541112541153
60.0000
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8428
99.7906
99.8952
79.5848
953295310
0.0000
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8428
99.7906
99.8952
79.6675
953295310
0.0000
ltrigg-rtg1SNPtvmap_l150_m2_e1homalt
99.8426
99.7339
99.9516
72.6103
412311412722
100.0000
egarrison-hhgaSNPtiHG002complexvar*
99.8425
99.7343
99.9509
17.5278
5070851351507107249148
59.4378
ltrigg-rtg1SNPtvmap_l125_m2_e0homalt
99.8420
99.7507
99.9334
68.3459
600215600344
100.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8420
100.0000
99.6845
55.0099
15800158050
0.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8420
100.0000
99.6845
52.3308
15800158050
0.0000
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8418
99.8734
99.8102
55.3516
15782157830
0.0000
eyeh-varpipeSNP*map_l150_m2_e1homalt
99.8415
99.7971
99.8860
75.5645
118032411393138
61.5385
raldana-dualsentieonSNPtifunc_cdshet
99.8414
99.9412
99.7418
23.3144
849958497220
0.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.8411
99.8094
99.8729
71.5397
31426314243
75.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8406
99.7395
99.9420
62.2220
34469344622
100.0000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8406
99.7106
99.9710
62.7500
344510344511
100.0000
jli-customSNPtvmap_sirenhomalt
99.8403
99.7332
99.9477
52.3546
17194461719199
100.0000
hfeng-pmm2SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8403
99.7607
99.9201
44.1798
625315625352
40.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8403
99.7607
99.9201
44.0150
625315625353
60.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8403
99.9262
99.7545
48.2662
406234063102
20.0000
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.8400
99.6805
100.0000
34.5560
312133900
eyeh-varpipeSNP*map_l150_m2_e0homalt
99.8398
99.7949
99.8849
75.5076
116752411277138
61.5385
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8398
99.6802
100.0000
44.8107
405213405200
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8397
99.8160
99.8635
64.2706
21704219432
66.6667
ltrigg-rtg1SNPtvHG002complexvar*
99.8396
99.7384
99.9410
21.7226
24551164424576814559
40.6897
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8395
99.7434
99.9357
57.3637
10883281088774
57.1429
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8394
99.6976
99.9816
59.7625
10878331087521
50.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8389
99.9596
99.7185
33.2528
24771248073
42.8571
hfeng-pmm2SNPtvHG002complexvar*
99.8387
99.7038
99.9739
21.6976
2454237292453396421
32.8125
dgrover-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8385
99.8386
99.8385
31.8944
24744247340
0.0000
ckim-dragenSNP*HG002complexvarhetalt
99.8384
99.6774
100.0000
39.2996
309131200
ckim-dragenSNPtvHG002complexvarhetalt
99.8384
99.6774
100.0000
39.2996
309131200
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8383
99.8028
99.8737
55.5058
2530950253073217
53.1250
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8378
99.7231
99.9528
67.2930
16928471692886
75.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8378
99.7231
99.9528
67.2930
16928471692886
75.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8378
99.7756
99.9001
47.7433
40029400240
0.0000
hfeng-pmm1SNPtiHG002complexvarhet
99.8377
99.6899
99.9860
16.6225
3137909763137394410
22.7273
ltrigg-rtg1SNPtvmap_l125_m1_e0homalt
99.8377
99.7440
99.9316
65.7995
584515584644
100.0000
astatham-gatkSNPtvHG002compoundhethomalt
99.8376
99.8524
99.8227
42.7314
33835337865
83.3333
hfeng-pmm3SNPtvHG002compoundhethomalt
99.8376
99.8229
99.8524
42.5250
33826338255
100.0000
hfeng-pmm2SNPtiHG002complexvarhet
99.8373
99.6928
99.9822
16.6591
313799967313749567
12.5000
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8372
100.0000
99.6750
69.7278
914092032
66.6667
raldana-dualsentieonSNPtiHG002complexvarhet
99.8369
99.6928
99.9815
16.7345
313799967313748589
15.5172
dgrover-gatkSNPtiHG002compoundhet*
99.8369
99.8284
99.8455
35.6925
1744830174462721
77.7778
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8366
99.9727
99.7008
51.3048
3665136651111
100.0000
jmaeng-gatkINDELI1_5HG002complexvarhomalt
99.8366
99.8959
99.7773
52.9712
1343414134403028
93.3333
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8365
99.9182
99.7549
50.2169
36633366399
100.0000
cchapple-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8364
99.7525
99.9204
39.9139
10077251003686
75.0000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.8363
99.9532
99.7196
42.4576
21371213462
33.3333