PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
6301-6350 / 86044 show all
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8480
100.0000
99.6965
80.1924
657065720
0.0000
egarrison-hhgaSNP*map_l100_m1_e0homalt
99.8480
99.7630
99.9332
60.8894
2693964269391817
94.4444
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8480
100.0000
99.6965
80.4160
657065720
0.0000
raldana-dualsentieonSNPtvmap_l100_m2_e0homalt
99.8479
99.7612
99.9348
60.9327
919222919263
50.0000
ltrigg-rtg1SNPtvmap_l150_m1_e0homalt
99.8478
99.7466
99.9492
70.2200
393610393722
100.0000
dgrover-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8478
99.8054
99.8902
58.2232
2820555282083120
64.5161
raldana-dualsentieonINDELI1_5HG002complexvarhomalt
99.8477
99.8959
99.7995
52.5914
1343414134382727
100.0000
hfeng-pmm2INDELI1_5HG002complexvarhomalt
99.8477
99.8885
99.8069
52.0702
1343315134372625
96.1538
eyeh-varpipeSNPtvmap_l100_m2_e0homalt
99.8474
99.8264
99.8684
67.1566
9198169105124
33.3333
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.7712
99.9233
30.6546
13083130211
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.6949
100.0000
35.4886
13074130700
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.7712
99.9233
31.1675
13083130211
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.6949
100.0000
33.7893
13074130700
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8470
99.8221
99.8718
54.9751
617311623282
25.0000
rpoplin-dv42SNPtisegduphomalt
99.8469
99.9067
99.7871
88.5156
7498774981616
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.8468
99.7812
99.9125
47.3260
22805228320
0.0000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.8468
99.7812
99.9125
46.5872
22805228320
0.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.9232
99.7699
29.4425
39033390291
11.1111
jli-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.8976
99.7954
28.9038
39024390381
12.5000
ndellapenna-hhgaSNPtvHG002complexvarhomalt
99.8464
99.8065
99.8864
22.8760
949271849493510897
89.8148
rpoplin-dv42SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8463
99.7898
99.9029
55.0600
617113617161
16.6667
cchapple-customSNP*segduphomalt
99.8463
99.8790
99.8136
87.7694
1073013107102020
100.0000
raldana-dualsentieonSNPtvHG002complexvar*
99.8458
99.7136
99.9784
21.7224
2454477052453625318
33.9623
hfeng-pmm1SNPtvHG002complexvar*
99.8458
99.7087
99.9833
21.6860
2454357172453494120
48.7805
hfeng-pmm2INDELD1_5*homalt
99.8457
99.8467
99.8447
59.0004
4885175488557674
97.3684
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.8457
99.8792
99.8121
39.2368
744397438143
21.4286
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8455
99.7089
99.9825
55.0685
17127501712432
66.6667
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8455
99.9742
99.7171
60.4476
387713877110
0.0000
ltrigg-rtg2SNPtimap_sirenhomalt
99.8455
99.7415
99.9498
49.3967
3781898378121918
94.7368
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8453
100.0000
99.6910
64.2357
968096832
66.6667
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8453
100.0000
99.6910
63.6738
968096832
66.6667
raldana-dualsentieonINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8453
100.0000
99.6910
63.9569
968096833
100.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8453
100.0000
99.6910
64.2094
968096833
100.0000
raldana-dualsentieonSNPtvmap_l100_m1_e0homalt
99.8450
99.7567
99.9335
58.3702
902122902163
50.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8449
99.7933
99.8965
69.7243
482710482753
60.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8449
99.8139
99.8759
69.1925
48289482865
83.3333
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8448
99.7726
99.9172
69.6417
482611482643
75.0000
cchapple-customSNP***
99.8448
99.8832
99.8063
20.8246
3051052356730495575917726
12.2697
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8445
99.7514
99.9377
43.4109
16054160511
100.0000
bgallagher-sentieonINDELD1_5HG002complexvarhomalt
99.8445
99.9151
99.7740
60.1815
105899105942422
91.6667
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8445
99.7514
99.9377
43.3110
16054160511
100.0000
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8445
99.7514
99.9377
43.6886
16054160511
100.0000
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8444
99.6892
100.0000
52.3753
16045160400
eyeh-varpipeSNPtvmap_l100_m1_e0homalt
99.8444
99.8231
99.8658
65.0500
9027168931124
33.3333
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8441
99.8073
99.8810
33.7603
673213671481
12.5000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8440
99.7316
99.9566
64.4687
11521311152154
80.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8440
99.7316
99.9566
64.4687
11521311152154
80.0000
bgallagher-sentieonINDELI1_5HG002complexvarhomalt
99.8440
99.9256
99.7625
52.9997
1343810134433231
96.8750
eyeh-varpipeSNPtvsegduphomalt
99.8439
99.8765
99.8114
90.5570
32344317666
100.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.8437
99.8912
99.7961
33.9853
734787343153
20.0000