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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 119 120 121 122 123 124 125 126 127 ... 1720 1721 » 6101-6150 / 86044 show all
hfeng-pmm2	SNP	*	map_l100_m2_e0	homalt	99.8674	99.8728	99.8619	63.3992	27488	35	27488	38	19	50.0000
ckim-dragen	SNP	tv	HG002compoundhet	homalt	99.8672	99.8819	99.8524	43.2020	3384	4	3383	5	5	100.0000
dgrover-gatk	SNP	tv	HG002compoundhet	homalt	99.8671	99.9115	99.8228	42.6879	3385	3	3380	6	5	83.3333
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8670	99.8227	99.9113	54.5565	1126	2	1126	1	1	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8670	99.8227	99.9113	46.4608	1126	2	1126	1	1	100.0000
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	42.7189	1125	3	1125	0	0
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	43.5354	1125	3	1118	0	0
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	52.3709	1125	3	1125	0	0
ndellapenna-hhga	SNP	ti	*	het	99.8668	99.7824	99.9512	16.9483	1279102	2789	1279103	624	83	13.3013
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8668	99.7340	100.0000	42.5727	1125	3	1125	0	0
eyeh-varpipe	SNP	ti	map_l125_m2_e0	homalt	99.8667	99.8327	99.9006	70.5235	11339	19	11058	11	6	54.5455
astatham-gatk	SNP	ti	segdup	homalt	99.8666	99.7868	99.9466	87.4281	7489	16	7489	4	4	100.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8666	99.7336	100.0000	51.5008	2246	6	2246	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.4595	374	0	374	1	0	0.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	58.1006	374	0	374	1	0	0.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8665	100.0000	99.7333	59.5032	374	0	374	1	0	0.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.8665	99.8517	99.8813	39.6598	6734	10	6732	8	2	25.0000
dgrover-gatk	INDEL	I1_5	HG002complexvar	homalt	99.8663	99.9256	99.8070	53.0009	13438	10	13443	26	25	96.1538
hfeng-pmm3	SNP	ti	map_l100_m2_e0	homalt	99.8662	99.8525	99.8798	62.5049	18282	27	18282	22	12	54.5455
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8661	99.7326	100.0000	52.3748	373	1	371	0	0
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8661	99.7326	100.0000	58.3705	373	1	373	0	0
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8660	99.8235	99.9086	58.4519	16400	29	16399	15	4	26.6667
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8658	99.8462	99.8855	53.8968	27916	43	27913	32	19	59.3750
ckim-dragen	SNP	*	HG002compoundhet	homalt	99.8656	99.8980	99.8332	35.0217	10771	11	10771	18	18	100.0000
hfeng-pmm1	INDEL	D1_5	*	homalt	99.8651	99.8549	99.8753	58.6796	48855	71	48859	61	60	98.3607
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.8650	99.8038	99.9264	43.6688	4069	8	4072	3	1	33.3333
hfeng-pmm2	SNP	*	map_l100_m1_e0	homalt	99.8648	99.8704	99.8593	60.9853	26968	35	26968	38	19	50.0000
ckim-dragen	SNP	ti	HG002compoundhet	homalt	99.8648	99.9053	99.8243	30.4352	7387	7	7388	13	13	100.0000
ltrigg-rtg1	SNP	*	map_siren	homalt	99.8648	99.7933	99.9364	52.2080	55042	114	55031	35	31	88.5714
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8647	100.0000	99.7297	82.0301	369	0	369	1	1	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8647	100.0000	99.7297	81.2373	369	0	369	1	0	0.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8647	100.0000	99.7297	81.5645	369	0	369	1	1	100.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8643	99.7290	100.0000	81.9295	368	1	369	0	0
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8643	99.7290	100.0000	80.4255	368	1	368	0	0
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8643	99.7290	100.0000	82.4038	368	1	366	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8642	99.7447	99.9840	43.8336	6252	16	6252	1	1	100.0000
egarrison-hhga	SNP	ti	map_siren	homalt	99.8640	99.7732	99.9551	52.1965	37830	86	37830	17	15	88.2353
egarrison-hhga	SNP	*	map_siren	homalt	99.8639	99.7770	99.9510	53.4112	55033	123	55033	27	24	88.8889
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8638	100.0000	99.7280	50.5648	3666	0	3666	10	10	100.0000
egarrison-hhga	SNP	tv	map_siren	homalt	99.8636	99.7854	99.9419	55.8765	17203	37	17203	10	9	90.0000
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8636	99.8363	99.8908	48.6619	3660	6	3660	4	4	100.0000
hfeng-pmm3	SNP	ti	map_l100_m1_e0	homalt	99.8636	99.8497	99.8775	60.0521	17933	27	17933	22	12	54.5455
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8635	99.7274	100.0000	40.2446	2195	6	2199	0	0
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8634	99.7271	100.0000	43.1128	1462	4	1462	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8634	99.7271	100.0000	46.4273	1462	4	1462	0	0
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8633	99.8472	99.8795	59.6020	55546	85	55530	67	38	56.7164
ckim-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8633	99.8773	99.8492	60.1757	10585	13	10592	16	14	87.5000
eyeh-varpipe	SNP	ti	HG002complexvar	het	99.8630	99.8948	99.8311	17.2379	314435	331	297366	503	109	21.6700

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