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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 116 117 118 119 120 121 122 123 124 ... 1720 1721 » 5951-6000 / 86044 show all
hfeng-pmm3	SNP	*	HG002complexvar	*	99.8875	99.7894	99.9859	18.8968	752792	1589	752645	106	40	37.7358
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8873	100.0000	99.7748	33.9286	443	0	443	1	1	100.0000
ndellapenna-hhga	SNP	tv	func_cds	het	99.8872	99.9624	99.8121	28.8312	2656	1	2656	5	0	0.0000
rpoplin-dv42	SNP	tv	func_cds	het	99.8871	99.9247	99.8495	30.5098	2655	2	2654	4	1	25.0000
hfeng-pmm1	SNP	tv	func_cds	het	99.8871	99.9247	99.8495	28.9115	2655	2	2654	4	0	0.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8870	99.7743	100.0000	32.1045	442	1	442	0	0
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8870	99.7743	100.0000	31.3665	442	1	442	0	0
astatham-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8868	99.8962	99.8774	60.2109	10587	11	10592	13	11	84.6154
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8865	99.9091	99.8638	42.0263	2199	2	2200	3	3	100.0000
raldana-dualsentieon	SNP	*	*	het	99.8865	99.8694	99.9036	19.2179	1871141	2446	1871016	1806	43	2.3810
jli-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8864	99.9091	99.8638	41.8076	2199	2	2199	3	2	66.6667
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8864	99.8637	99.9091	41.9065	2198	3	2198	2	2	100.0000
ltrigg-rtg2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8863	99.7728	100.0000	39.6930	2196	5	2200	0	0
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8863	99.9546	99.8181	38.5067	2200	1	2195	4	2	50.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8860	99.9003	99.8718	61.7413	7012	7	7013	9	1	11.1111
qzeng-custom	SNP	ti	func_cds	homalt	99.8860	99.8673	99.9047	18.9998	5268	7	5243	5	3	60.0000
jli-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8860	99.8316	99.9405	61.6312	10080	17	10080	6	4	66.6667
eyeh-varpipe	SNP	tv	map_siren	homalt	99.8859	99.8782	99.8937	58.0270	17219	21	16916	18	8	44.4444
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8855	99.7712	100.0000	34.7956	1308	3	1308	0	0
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8854	99.8625	99.9082	58.4392	10896	15	10886	10	6	60.0000
ckim-gatk	SNP	*	func_cds	homalt	99.8852	99.7707	100.0000	21.5790	6963	16	6963	0	0
jmaeng-gatk	SNP	*	func_cds	homalt	99.8852	99.7707	100.0000	21.6496	6963	16	6963	0	0
hfeng-pmm2	SNP	*	*	hetalt	99.8851	99.7704	100.0000	49.0323	869	2	869	0	0
hfeng-pmm2	SNP	tv	*	hetalt	99.8851	99.7704	100.0000	49.0323	869	2	869	0	0
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8849	99.7700	100.0000	52.7633	6074	14	6077	0	0
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8842	99.9226	99.8459	59.1543	3875	3	3887	6	2	33.3333
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8841	99.7685	100.0000	57.9364	3878	9	3877	0	0
jli-custom	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
ckim-dragen	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.0308	860	2	860	0	0
ckim-dragen	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.0308	860	2	860	0	0
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8839	99.9535	99.8144	47.5030	2151	1	2151	4	4	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8839	99.9535	99.8144	47.5030	2151	1	2151	4	4	100.0000
hfeng-pmm2	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.2143	860	2	860	0	0
hfeng-pmm2	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.2143	860	2	860	0	0
hfeng-pmm1	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
hfeng-pmm1	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
hfeng-pmm3	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.8700	860	2	860	0	0
hfeng-pmm3	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.8700	860	2	860	0	0
jli-custom	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8835	99.8894	99.8776	53.9498	17158	19	17135	21	9	42.8571
eyeh-varpipe	SNP	ti	map_l250_m0_e0	homalt	99.8833	100.0000	99.7669	92.9359	436	0	428	1	1	100.0000
gduggal-bwafb	SNP	*	HG002complexvar	homalt	99.8832	99.8222	99.9441	19.8833	288062	513	288090	161	137	85.0932
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8830	99.8129	99.9531	76.9081	2134	4	2132	1	1	100.0000
dgrover-gatk	SNP	tv	*	het	99.8830	99.9556	99.8105	23.6829	591433	263	591362	1123	57	5.0757
jli-custom	SNP	ti	func_cds	het	99.8825	99.9530	99.8121	22.8972	8500	4	8500	16	0	0.0000
hfeng-pmm3	INDEL	D1_5	*	homalt	99.8825	99.8835	99.8815	58.1721	48869	57	48874	58	56	96.5517
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8821	99.9214	99.8429	48.2941	2542	2	2542	4	0	0.0000
ndellapenna-hhga	SNP	*	*	*	99.8818	99.8118	99.9519	18.1821	3048871	5748	3048919	1468	467	31.8120
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8817	99.8462	99.9171	55.0271	25320	39	25323	21	16	76.1905
egarrison-hhga	SNP	tv	*	*	99.8815	99.8074	99.9558	20.9138	967822	1868	967852	428	112	26.1682

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