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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 114 115 116 117 118 119 120 121 122 ... 1720 1721 » 5851-5900 / 86044 show all
hfeng-pmm3	SNP	*	HG002compoundhet	homalt	99.8980	99.8887	99.9072	34.7339	10770	12	10770	10	10	100.0000
rpoplin-dv42	SNP	*	HG002complexvar	het	99.8978	99.8245	99.9712	18.3215	464680	817	464534	134	101	75.3731
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.8976	99.8720	99.9231	28.9976	3901	5	3900	3	2	66.6667
dgrover-gatk	SNP	*	segdup	homalt	99.8976	99.8790	99.9162	88.2042	10730	13	10730	9	9	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8976	100.0000	99.7954	50.4360	2439	0	2439	5	0	0.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8976	99.7954	100.0000	42.9630	1463	3	1463	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8976	99.7954	100.0000	42.8240	1463	3	1478	0	0
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8976	100.0000	99.7954	52.3680	2439	0	2439	5	0	0.0000
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8976	99.7954	100.0000	44.6809	1463	3	1482	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8975	99.9180	99.8770	52.7132	2437	2	2437	3	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	67.7888	487	0	487	1	1	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	67.0715	487	0	487	1	1	100.0000
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	64.8415	487	0	487	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	68.0419	487	0	487	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	67.2263	487	0	487	1	1	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	67.6178	487	0	487	1	0	0.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8974	100.0000	99.7951	68.0419	487	0	487	1	1	100.0000
ltrigg-rtg1	SNP	ti	*	*	99.8970	99.8948	99.8992	16.3223	2083318	2194	2083241	2102	174	8.2778
dgrover-gatk	SNP	*	func_cds	het	99.8970	99.9642	99.8299	26.9739	11157	4	11154	19	0	0.0000
jli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8969	100.0000	99.7940	63.6602	968	0	969	2	2	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8968	100.0000	99.7938	63.6432	968	0	968	2	2	100.0000
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8968	100.0000	99.7938	63.5064	968	0	968	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8968	100.0000	99.7938	64.2462	968	0	968	2	2	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8968	100.0000	99.7938	64.2989	968	0	968	2	2	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8968	100.0000	99.7938	64.2989	968	0	968	2	2	100.0000
astatham-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8968	100.0000	99.7938	64.2066	968	0	968	2	2	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8967	100.0000	99.7936	64.0045	968	0	967	2	2	100.0000
dgrover-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8963	99.9245	99.8680	60.1555	10590	8	10595	14	12	85.7143
ltrigg-rtg2	SNP	ti	*	*	99.8963	99.8985	99.8940	15.8136	2083396	2116	2083301	2210	180	8.1448
hfeng-pmm3	INDEL	D1_5	HG002complexvar	homalt	99.8962	99.8773	99.9151	58.2388	10585	13	10590	9	8	88.8889
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8960	99.8713	99.9208	48.6105	10089	13	10089	8	7	87.5000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8959	99.7921	100.0000	53.7572	480	1	480	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.8959	99.7921	100.0000	45.3303	480	1	480	0	0
hfeng-pmm1	SNP	tv	map_siren	homalt	99.8956	99.8898	99.9014	56.0205	17221	19	17219	17	8	47.0588
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8955	100.0000	99.7912	74.6829	478	0	478	1	1	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8955	100.0000	99.7912	75.1685	478	0	478	1	1	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8955	100.0000	99.7912	74.9083	478	0	478	1	1	100.0000
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8953	99.9243	99.8662	56.6428	17164	13	17169	23	7	30.4348
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8950	99.8510	99.9390	54.8240	14748	22	14750	9	4	44.4444
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8949	99.9299	99.8599	26.8443	1426	1	1426	2	2	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8949	99.8598	99.9299	27.9657	1425	2	1426	1	0	0.0000
eyeh-varpipe	SNP	ti	map_siren	homalt	99.8945	99.8734	99.9157	53.2558	37868	48	36723	31	17	54.8387
bgallagher-sentieon	SNP	*	*	het	99.8943	99.9607	99.8280	19.9469	1872851	736	1872726	3227	129	3.9975
egarrison-hhga	SNP	ti	HG002complexvar	homalt	99.8937	99.8480	99.9395	18.4037	193169	294	193188	117	94	80.3419
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8937	99.8584	99.9291	56.1359	11280	16	11280	8	7	87.5000
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8937	99.8407	99.9468	55.7785	11278	18	11278	6	6	100.0000
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8935	99.8416	99.9455	56.0535	20167	32	20178	11	11	100.0000
hfeng-pmm1	SNP	ti	HG002complexvar	*	99.8935	99.8000	99.9872	17.3497	507419	1017	507360	65	31	47.6923
jlack-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8935	99.8564	99.9306	55.5702	20170	29	20170	14	13	92.8571
eyeh-varpipe	SNP	*	map_siren	homalt	99.8931	99.8749	99.9112	54.6593	55087	69	52905	47	25	53.1915

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