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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5801-5850 / 86044 show all
ltrigg-rtg1SNP*HG002complexvarhomalt
99.9052
99.8382
99.9722
19.7176
2881074672880528073
91.2500
jpowers-varprowlSNPtifunc_cdshomalt
99.9052
99.9431
99.8674
21.7810
52723527277
100.0000
jmaeng-gatkSNPtifunc_cdshomalt
99.9051
99.8104
100.0000
20.1062
526510526500
ckim-gatkSNPtifunc_cdshomalt
99.9051
99.8104
100.0000
20.1183
526510526500
jli-customSNPtv**
99.9049
99.9528
99.8570
21.1774
969232458969166138883
5.9798
raldana-dualsentieonSNPtv**
99.9049
99.8971
99.9127
21.2799
96869299896861284644
5.2010
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9047
99.8095
100.0000
67.3317
524152400
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9047
99.8095
100.0000
67.7340
524152400
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9047
99.8095
100.0000
67.8528
524152400
jli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.9045
99.8092
100.0000
65.9727
523152300
ckim-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.9045
99.8092
100.0000
64.1781
523152300
dgrover-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.9045
99.8092
100.0000
64.4942
523152300
bgallagher-sentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.9045
99.8092
100.0000
64.1043
523152300
astatham-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.9045
99.8092
100.0000
64.2026
523152300
jli-customSNP*func_cds*
99.9036
99.9559
99.8514
23.3699
18142818142270
0.0000
ltrigg-rtg1SNPtiHG002complexvarhomalt
99.9028
99.8341
99.9715
18.2456
1931423211930495554
98.1818
ckim-vqsrINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9026
99.9292
99.8761
56.3916
112888112881413
92.8571
hfeng-pmm1SNP*HG002compoundhethomalt
99.9026
99.9073
99.8980
34.9324
1077210107721111
100.0000
jli-customSNP*segduphomalt
99.9023
99.8976
99.9069
88.0536
1073211107321010
100.0000
raldana-dualsentieonSNP*segduphomalt
99.9022
99.8883
99.9162
87.9114
10731121073199
100.0000
ckim-dragenSNP*segduphomalt
99.9022
99.8790
99.9255
87.7402
10730131073088
100.0000
raldana-dualsentieonSNPti*het
99.9019
99.8809
99.9229
17.7757
12803641527128031398821
2.1255
hfeng-pmm3SNPtiHG002complexvar*
99.9019
99.8171
99.9868
17.4486
5075069305074466725
37.3134
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9017
99.8231
99.9803
53.8406
10160181016022
100.0000
hfeng-pmm3SNP*func_cdshet
99.9015
99.9552
99.8478
24.3993
11156511153170
0.0000
hfeng-pmm1SNP*func_cdshet
99.9015
99.9462
99.8567
23.9755
11155611152160
0.0000
hfeng-pmm2SNPtvmap_sirenhomalt
99.9014
99.9014
99.9014
56.1199
172231717220179
52.9412
raldana-dualsentieonSNPtvmap_sirenhomalt
99.9013
99.8318
99.9710
52.2802
17211291720855
100.0000
hfeng-pmm1SNPtimap_sirenhomalt
99.9011
99.8760
99.9261
52.1075
3786947378652818
64.2857
jli-customINDELD1_5HG002complexvarhomalt
99.9010
99.9151
99.8868
59.4114
105899105931210
83.3333
astatham-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8317
99.9703
49.2989
10085171008533
100.0000
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8514
99.9504
61.6260
10082151008255
100.0000
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8415
99.9603
61.7282
10081161008144
100.0000
eyeh-varpipeSNP*segduphomalt
99.9005
99.9348
99.8662
89.0870
107367104531414
100.0000
rpoplin-dv42SNPtiHG002complexvarhet
99.9002
99.8243
99.9761
16.8206
3142135533141527555
73.3333
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9002
99.8433
99.9572
60.4236
700811700432
66.6667
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9002
99.8860
99.9144
60.6431
70118700763
50.0000
hfeng-pmm3SNPtifunc_cdshet
99.9001
99.9530
99.8473
22.7326
850048498130
0.0000
jlack-gatkSNPtvHG002complexvar*
99.9000
99.8932
99.9069
22.4572
24588926324579522981
35.3712
bgallagher-sentieonSNPtisegduphomalt
99.9000
99.8534
99.9467
87.4231
749411749444
100.0000
ckim-dragenSNPtisegduphomalt
99.9000
99.8401
99.9600
86.9440
749312749333
100.0000
jli-customINDELI1_5HG002complexvarhomalt
99.8996
99.9182
99.8811
52.2818
1343711134411614
87.5000
hfeng-pmm1SNP*map_sirenhomalt
99.8994
99.8803
99.9184
53.4037
5509066550844526
57.7778
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8991
99.8789
99.9192
29.1154
24753247421
50.0000
raldana-dualsentieonSNPtifunc_cds*
99.8985
99.9565
99.8406
21.8782
13781613779220
0.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8985
99.7972
100.0000
50.7028
492149100
egarrison-hhgaSNP***
99.8985
99.8365
99.9607
18.3304
3049624499530496771199305
25.4379
dgrover-gatkSNP*HG002compoundhethomalt
99.8980
99.9165
99.8794
34.8304
107739107681312
92.3077
eyeh-varpipeSNPtiHG002compoundhethetalt
99.8980
99.8273
99.9687
18.5958
5781639821
50.0000
jlack-gatkSNPtiHG002complexvarhet
99.8980
99.8818
99.9142
17.5660
31439437231434027088
32.5926