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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5751-5800 / 86044 show all
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.9113
99.8227
100.0000
54.1531
11262112600
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9111
99.8815
99.9407
63.6892
16862168611
100.0000
hfeng-pmm2SNP**het
99.9111
99.8854
99.9369
19.2150
187143921481871315118142
3.5563
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9111
99.8224
100.0000
54.2066
22484224800
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9111
99.8223
100.0000
64.1566
16853168500
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9111
99.8224
100.0000
48.0532
22484222800
gduggal-bwafbSNPtv*homalt
99.9109
99.8520
99.9697
21.5631
37656555837657911464
56.1404
hfeng-pmm3SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9108
99.8613
99.9603
61.0721
10083141008344
100.0000
hfeng-pmm2SNPtimap_sirenhomalt
99.9103
99.8998
99.9208
52.1071
3787838378723020
66.6667
ltrigg-rtg1SNPtvHG002complexvarhomalt
99.9101
99.8465
99.9737
22.5425
94965146950032519
76.0000
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9099
99.8199
100.0000
58.1282
38807387900
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9097
99.9179
99.9015
54.3245
60835608364
66.6667
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9097
99.8737
99.9458
56.0006
11070141106665
83.3333
rpoplin-dv42SNPtvHG002complexvar*
99.9096
99.8615
99.9577
21.9240
24581134124570210487
83.6538
bgallagher-sentieonSNPtifunc_cds*
99.9094
99.9565
99.8623
22.5049
13781613779190
0.0000
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9090
100.0000
99.8182
81.0802
549054910
0.0000
jli-customSNP**het
99.9088
99.9498
99.8677
18.9256
187264794018725582480145
5.8468
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9088
99.8179
100.0000
81.3161
548154800
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9087
99.8904
99.9269
30.4624
27353273522
100.0000
dgrover-gatkSNPtvfunc_cds*
99.9085
99.9771
99.8400
29.8268
43701436970
0.0000
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9083
99.8168
100.0000
76.4680
545154500
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9083
99.8168
100.0000
76.0545
545154500
hfeng-pmm1SNPtv*het
99.9077
99.8553
99.9601
20.8554
59084085659076623619
8.0509
hfeng-pmm2SNP*map_sirenhomalt
99.9075
99.9003
99.9148
53.4382
5510155550924729
61.7021
jli-customSNPtvHG002complexvarhet
99.9074
99.8560
99.9588
21.3761
1505142171504546222
35.4839
ckim-dragenSNPtvsegduphomalt
99.9074
99.9691
99.8458
89.2553
32371323755
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9073
99.8718
99.9429
60.7832
70109700643
75.0000
dgrover-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
100.0000
99.8145
47.6826
21520215244
100.0000
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1764
21502215022
100.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1619
21502215022
100.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9535
99.8607
47.4506
21511215133
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
100.0000
99.8145
47.5553
21520215244
100.0000
dgrover-gatkSNPtisegduphomalt
99.9067
99.8534
99.9600
87.5169
749411749433
100.0000
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.9067
99.8135
100.0000
43.3110
16063160600
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.9067
99.8757
99.9378
47.2268
16072160711
100.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.9067
99.8135
100.0000
43.7478
16063160600
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.9067
99.8135
100.0000
43.8707
16063159800
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9066
99.8428
99.9705
54.1001
10162161016233
100.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9064
99.9065
99.9064
76.8906
21362213421
50.0000
egarrison-hhgaSNPti**
99.9062
99.8498
99.9627
17.0848
208237931322082402778200
25.7069
hfeng-pmm1SNPtifunc_cdshet
99.9060
99.9530
99.8590
22.2902
850048498120
0.0000
ndellapenna-hhgaSNP*func_cdshet
99.9060
99.9552
99.8568
24.2730
11156511156160
0.0000
hfeng-pmm1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9059
99.8514
99.9603
61.6429
10082151008244
100.0000
hfeng-pmm3SNPtvfunc_cdshet
99.9059
99.9624
99.8496
29.2819
26561265540
0.0000
ckim-dragenSNPtvHG002complexvarhet
99.9058
99.9098
99.9019
22.2740
15059513615074014870
47.2973
hfeng-pmm3SNP*map_sirenhomalt
99.9057
99.8840
99.9274
53.2388
5509264550834022
55.0000
bgallagher-sentieonSNPtiHG002compoundhethomalt
99.9053
99.9189
99.8918
30.4822
73886738888
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.9052
99.8917
99.9188
56.2157
11072121106894
44.4444
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9052
100.0000
99.8105
51.3073
15800158030
0.0000
eyeh-varpipeSNPtvHG002compoundhethetalt
99.9052
99.8840
99.9265
25.0046
8611407932
66.6667