PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56051-56100 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 64.6259 | 92.9598 | 0 | 0 | 95 | 52 | 33 | 63.4615 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 86.0000 | 87.6847 | 0 | 0 | 86 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 70.3704 | 81.7321 | 0 | 0 | 95 | 40 | 31 | 77.5000 | |
| eyeh-varpipe | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 65.6489 | 85.9893 | 0 | 0 | 86 | 45 | 39 | 86.6667 | |
| eyeh-varpipe | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 91.3978 | 83.9655 | 0 | 0 | 85 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 2.8571 | 84.2342 | 0 | 0 | 1 | 34 | 30 | 88.2353 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 21.1538 | 92.0368 | 0 | 0 | 11 | 41 | 22 | 53.6585 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 33.3333 | 95.3488 | 0 | 0 | 2 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.1667 | 0 | 0 | 7 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 6.2500 | 88.7324 | 0 | 0 | 2 | 30 | 16 | 53.3333 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 94.8520 | 0 | 0 | 64 | 16 | 13 | 81.2500 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 54.2373 | 95.3978 | 0 | 0 | 32 | 27 | 19 | 70.3704 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 61.8280 | 95.2210 | 0 | 0 | 115 | 71 | 46 | 64.7887 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 82.9268 | 96.4777 | 0 | 0 | 34 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 75.0000 | 95.3168 | 0 | 0 | 51 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 38.9610 | 93.9655 | 0 | 0 | 30 | 47 | 29 | 61.7021 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 96.8085 | 0 | 0 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.1429 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.8571 | 94.1667 | 0 | 0 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 94.8980 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 91.0448 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 93.4426 | 0 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 94.5205 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.2264 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 89.4737 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 27.0270 | 90.4393 | 0 | 0 | 10 | 27 | 15 | 55.5556 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 94.3662 | 0 | 0 | 2 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 92.8571 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 8.3333 | 87.3684 | 0 | 0 | 2 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 60.9375 | 95.0788 | 0 | 0 | 78 | 50 | 35 | 70.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 82.6087 | 96.5465 | 0 | 0 | 19 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.3922 | 94.9153 | 0 | 0 | 41 | 10 | 8 | 80.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 94.2060 | 0 | 0 | 18 | 36 | 24 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 73.1183 | 95.8464 | 0 | 0 | 68 | 25 | 21 | 84.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 89.4737 | 96.8543 | 0 | 0 | 17 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.3953 | 95.1412 | 0 | 0 | 35 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 51.6129 | 95.8667 | 0 | 0 | 16 | 15 | 12 | 80.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.7586 | 94.9565 | 0 | 0 | 91 | 54 | 38 | 70.3704 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 82.1429 | 96.4780 | 0 | 0 | 23 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 94.8454 | 0 | 0 | 44 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 38.7097 | 93.8796 | 0 | 0 | 24 | 38 | 25 | 65.7895 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 61.8280 | 95.2210 | 0 | 0 | 115 | 71 | 46 | 64.7887 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 82.9268 | 96.4777 | 0 | 0 | 34 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 95.3168 | 0 | 0 | 51 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 38.9610 | 93.9655 | 0 | 0 | 30 | 47 | 29 | 61.7021 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 75.0000 | 95.7412 | 0 | 0 | 78 | 26 | 24 | 92.3077 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 91.3043 | 96.4615 | 0 | 0 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 81.6327 | 95.5046 | 0 | 0 | 40 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 53.1250 | 95.4416 | 0 | 0 | 17 | 15 | 13 | 86.6667 | |