PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55801-55850 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 78.3784 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 82.2222 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 0 | 5 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 85.7143 | 84.4444 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 85.7143 | 84.4444 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 50.0000 | 60.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 50.0000 | 85.7143 | 0 | 1 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 85.7143 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 66.6667 | 88.4615 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 66.6667 | 78.5714 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 87.5000 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 88.2353 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 88.2353 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 88.8889 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 88.8889 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 86.3636 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 50.0000 | 50.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 50.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.9431 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 76.1194 | 94.5395 | 0 | 0 | 51 | 16 | 12 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 95.2381 | 94.7368 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 63.6364 | 96.3333 | 0 | 0 | 7 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 68.5714 | 93.3712 | 0 | 0 | 24 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 79.3651 | 87.3239 | 0 | 0 | 50 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 95.2381 | 85.1064 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 66.6667 | 93.2331 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 72.7273 | 85.2018 | 0 | 0 | 24 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 37.5000 | 90.6977 | 0 | 0 | 6 | 10 | 8 | 80.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 75.0000 | 90.5882 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 94.1349 | 0 | 0 | 8 | 12 | 8 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.1748 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 38.4615 | 92.2156 | 0 | 0 | 5 | 8 | 6 | 75.0000 | |