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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5501-5550 / 86044 show all
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9456
99.8912
100.0000
31.5724
27553274600
jlack-gatkSNP*HG002complexvarhomalt
99.9456
99.9096
99.9816
19.7398
2883132612882845346
86.7925
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9456
99.9637
99.9275
37.1096
27571275722
100.0000
egarrison-hhgaSNPtifunc_cds*
99.9456
99.9637
99.9275
22.3817
13782513782100
0.0000
dgrover-gatkSNP***
99.9456
99.9631
99.9282
19.2565
3053492112730533432195207
9.4305
raldana-dualsentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9455
99.9307
99.9604
55.9950
20185142018588
100.0000
hfeng-pmm2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9455
99.9208
99.9703
62.5348
1008981008933
100.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9635
99.9270
33.2602
27371273721
50.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9635
99.9270
31.7808
27371273721
50.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.6526
27362273611
100.0000
dgrover-gatkSNPtiHG002complexvarhet
99.9452
99.9164
99.9739
17.0118
3145032633144498232
39.0244
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.9710
27362273611
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.1349
27362273611
100.0000
bgallagher-sentieonSNP*HG002complexvarhet
99.9449
99.9235
99.9662
18.4844
46514135646501115750
31.8471
cchapple-customSNP**homalt
99.9445
99.8940
99.9951
16.2464
1178910125111776365851
87.9310
hfeng-pmm3SNPtv**
99.9443
99.9171
99.9715
21.1004
96888680496880427631
11.2319
dgrover-gatkSNP*HG002complexvarhet
99.9434
99.9156
99.9712
18.5452
46510439346497413453
39.5522
hfeng-pmm3SNPtvfunc_cds*
99.9428
99.9771
99.9085
28.1938
43701436940
0.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9425
99.9507
99.9343
54.5644
60853608844
100.0000
rpoplin-dv42SNP*HG002compoundhethetalt
99.9420
99.8840
100.0000
22.1519
861186100
rpoplin-dv42SNPtifunc_cds*
99.9420
99.9492
99.9347
23.0636
1378071377892
22.2222
rpoplin-dv42SNPtvHG002compoundhethetalt
99.9420
99.8840
100.0000
22.1519
861186100
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.9420
99.9130
99.9710
37.2906
34473344311
100.0000
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9417
99.8834
100.0000
47.3652
857186900
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9417
99.8834
100.0000
46.3975
857186300
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9417
99.8834
100.0000
46.5044
857185700
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9417
99.8834
100.0000
46.5044
857185700
hfeng-pmm2SNP***
99.9416
99.9254
99.9579
18.8175
3052339228030522021287114
8.8578
jli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9411
99.9607
99.9214
54.0979
1017441017488
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9411
99.9607
99.9214
54.3285
1017441017488
100.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9259
99.9555
36.4048
67405674033
100.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9407
99.8815
100.0000
64.4454
16862168600
hfeng-pmm1SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9407
99.8815
100.0000
65.2514
16862168600
hfeng-pmm2SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.9407
99.8815
100.0000
65.8566
16862168600
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9110
99.9703
35.3939
67396673922
100.0000
jli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9307
99.9505
49.4545
1009571009553
60.0000
hfeng-pmm3SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9208
99.9604
49.7187
1009481009443
75.0000
rpoplin-dv42SNPtv*het
99.9398
99.9275
99.9522
22.4174
591267429591187283104
36.7491
jli-customSNP*HG002complexvar*
99.9396
99.9065
99.9727
19.0201
75367670575356520691
44.1748
dgrover-gatkSNPtvHG002complexvarhet
99.9396
99.9138
99.9655
21.5720
1506011301505255221
40.3846
cchapple-customSNPtv*homalt
99.9396
99.8847
99.9947
18.4432
3766884353760842017
85.0000
hfeng-pmm3SNP*segduphomalt
99.9395
99.9535
99.9256
88.8624
1073851073888
100.0000
dgrover-gatkSNPti*het
99.9394
99.9568
99.9221
18.8587
1281337554128128399987
8.7087
hfeng-pmm1SNPtiHG002compoundhethomalt
99.9392
99.9594
99.9189
30.5967
73913739166
100.0000
bgallagher-sentieonSNPtvHG002complexvarhet
99.9389
99.9237
99.9542
21.4883
1506161151505406921
30.4348
hfeng-pmm3SNPti*het
99.9388
99.9112
99.9664
17.2454
12807531138128070343018
4.1861
jlack-gatkSNPtvHG002complexvarhomalt
99.9385
99.8959
99.9811
22.6324
9501299949941814
77.7778
rpoplin-dv42SNPtvHG002complexvarhomalt
99.9385
99.9201
99.9569
22.8530
9503576950114137
90.2439