PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55101-55150 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 75.0000 | 97.6744 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 66.6667 | 97.8723 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.7742 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 75.0000 | 97.9434 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 66.6667 | 98.1073 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2222 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 75.0000 | 98.0050 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 66.6667 | 98.1595 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.3333 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 73.1959 | 94.5105 | 0 | 0 | 71 | 26 | 14 | 53.8462 | |
| cchapple-custom | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 65.7895 | 94.4888 | 0 | 0 | 50 | 26 | 14 | 53.8462 | |
| cchapple-custom | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5876 | 0 | 0 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 100.0000 | 99.0545 | 0 | 0 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 100.0000 | 99.3518 | 0 | 0 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 98.0916 | 0 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 96.7742 | 93.6039 | 0 | 0 | 90 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 96.7742 | 83.0601 | 0 | 0 | 90 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 88.1356 | 86.5143 | 0 | 0 | 104 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 88.0342 | 86.0382 | 0 | 0 | 103 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 72.2222 | 96.5714 | 0 | 0 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 68.7500 | 96.2963 | 0 | 0 | 11 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.8495 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5039 | 0 | 0 | 29 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 86.6667 | 96.3066 | 0 | 0 | 104 | 16 | 6 | 37.5000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 82.2222 | 96.5701 | 0 | 0 | 74 | 16 | 6 | 37.5000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.2000 | 0 | 0 | 30 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 95.8904 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 95.1613 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 91.6667 | 94.1176 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 83.3333 | 95.9732 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 89.0909 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 92.9936 | 0 | 0 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 95.3704 | 0 | 0 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 87.7551 | 0 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 71.4286 | 95.7958 | 0 | 0 | 10 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 95.5056 | 0 | 0 | 8 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 82.6667 | 96.5181 | 0 | 0 | 62 | 13 | 4 | 30.7692 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 77.1930 | 96.7558 | 0 | 0 | 44 | 13 | 4 | 30.7692 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4660 | 0 | 0 | 18 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.2459 | 96.6703 | 0 | 0 | 52 | 9 | 3 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 97.0000 | 0 | 0 | 36 | 9 | 3 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 95.1807 | 0 | 0 | 16 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 84.2697 | 96.2668 | 0 | 0 | 75 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 78.4615 | 96.6234 | 0 | 0 | 51 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.7712 | 0 | 0 | 24 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 86.6667 | 96.3066 | 0 | 0 | 104 | 16 | 6 | 37.5000 | |