PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54901-54950 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 3.3846 | 0.0000 | 0.0000 | 22 | 628 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 5.1948 | 0.0000 | 0.0000 | 24 | 438 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 2.0408 | 0.0000 | 0.0000 | 1 | 48 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 4.2553 | 0.0000 | 0.0000 | 2 | 45 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 4.1667 | 0.0000 | 0.0000 | 2 | 46 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 3.9216 | 0.0000 | 0.0000 | 2 | 49 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 1 | 12 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 12.5000 | 0.0000 | 0.0000 | 1 | 7 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 9.5238 | 0.0000 | 0.0000 | 8 | 76 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | segdup | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 4 | 48 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | * | hetalt | 0.0000 | 4.0372 | 0.0000 | 0.0000 | 330 | 7844 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 6.5153 | 0.0000 | 0.0000 | 66 | 947 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 4.0486 | 0.0000 | 0.0000 | 330 | 7821 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.8039 | 0.0000 | 0.0000 | 90 | 2276 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.3012 | 0.0000 | 0.0000 | 293 | 6519 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 4.0700 | 0.0000 | 0.0000 | 328 | 7731 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 10.2564 | 0.0000 | 0.0000 | 4 | 35 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 3.6364 | 0.0000 | 0.0000 | 2 | 53 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.0303 | 0.0000 | 0.0000 | 1 | 32 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.2787 | 0.0000 | 0.0000 | 56 | 1652 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 4.1057 | 0.0000 | 0.0000 | 292 | 6820 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.3582 | 0.0000 | 0.0000 | 237 | 5201 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.1260 | 0.0000 | 0.0000 | 296 | 6878 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 4.0700 | 0.0000 | 0.0000 | 328 | 7731 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 4.4216 | 0.0000 | 0.0000 | 211 | 4561 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 4.5872 | 0.0000 | 0.0000 | 40 | 832 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 8.1081 | 0.0000 | 0.0000 | 3 | 34 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 22.2222 | 0.0000 | 0.0000 | 2 | 7 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 3.7225 | 0.0000 | 0.0000 | 44 | 1138 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 2.3960 | 0.0000 | 0.0000 | 19 | 774 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 3.9384 | 0.0000 | 0.0000 | 23 | 561 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 4.1237 | 0.0000 | 0.0000 | 4 | 93 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 4.4118 | 0.0000 | 0.0000 | 3 | 65 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 4.4118 | 0.0000 | 0.0000 | 3 | 65 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 4.1096 | 0.0000 | 0.0000 | 3 | 70 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 5.2632 | 0.0000 | 0.0000 | 1 | 18 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 5.2632 | 0.0000 | 0.0000 | 1 | 18 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 5.0000 | 0.0000 | 0.0000 | 1 | 19 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 7.0707 | 0.0000 | 0.0000 | 7 | 92 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 12.2449 | 0.0000 | 0.0000 | 6 | 43 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.0477 | 0.0000 | 0.0000 | 1 | 2097 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.2985 | 0.0000 | 0.0000 | 1 | 334 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0478 | 0.0000 | 0.0000 | 1 | 2092 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | * | hetalt | 0.0000 | 3.9661 | 0.0000 | 0.0000 | 444 | 10751 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | HG002complexvar | hetalt | 0.0000 | 7.3001 | 0.0000 | 0.0000 | 126 | 1600 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 0.0000 | 3.9635 | 0.0000 | 0.0000 | 443 | 10734 | 0 | 0 | 0 | ||