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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 105 106 107 108 109 110 111 112 113 ... 1720 1721 » 5401-5450 / 86044 show all
bgallagher-sentieon	SNP	*	HG002complexvar	homalt	99.9685	99.9494	99.9875	19.8511	288428	146	288403	36	34	94.4444
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.9684	100.0000	99.9367	49.1803	1580	0	1580	1	0	0.0000
jlack-gatk	SNP	tv	*	homalt	99.9678	99.9488	99.9867	20.1040	376930	193	376912	50	30	60.0000
ltrigg-rtg2	SNP	tv	*	homalt	99.9678	99.9486	99.9870	19.3650	376927	194	376951	49	41	83.6735
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9671	99.9671	99.9671	54.5909	6086	2	6086	2	2	100.0000
ltrigg-rtg1	SNP	*	*	homalt	99.9664	99.9480	99.9848	17.4153	1179543	614	1179482	179	154	86.0335
ltrigg-rtg1	SNP	ti	*	homalt	99.9664	99.9474	99.9854	16.2302	802614	422	802519	117	112	95.7265
ltrigg-rtg1	SNP	tv	*	homalt	99.9663	99.9491	99.9836	19.8090	376929	192	376963	62	42	67.7419
bgallagher-sentieon	SNP	tv	HG002complexvar	homalt	99.9663	99.9453	99.9874	22.7972	95059	52	95044	12	10	83.3333
dgrover-gatk	SNP	ti	HG002complexvar	homalt	99.9661	99.9447	99.9876	18.3249	193356	107	193346	24	24	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	43.8267	1465	1	1465	0	0
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	43.5670	1465	1	1465	0	0
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	45.7608	1465	1	1465	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	43.3050	1465	1	1465	0	0
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9659	99.9318	100.0000	42.9072	1465	1	1465	0	0
dgrover-gatk	SNP	*	HG002complexvar	homalt	99.9653	99.9435	99.9872	19.8551	288411	163	288386	37	35	94.5946
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	27.1057	1427	0	1427	1	1	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	26.9939	1427	0	1427	1	1	100.0000
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	26.8443	1427	0	1427	1	1	100.0000
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	30.2053	1427	0	1427	1	1	100.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	27.1057	1427	0	1427	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9650	100.0000	99.9300	26.8817	1427	0	1427	1	1	100.0000
jli-custom	SNP	ti	HG002complexvar	homalt	99.9648	99.9478	99.9819	18.3860	193362	101	193356	35	26	74.2857
ltrigg-rtg2	SNP	*	func_cds	homalt	99.9642	99.9284	100.0000	21.6932	6974	5	6974	0	0
astatham-gatk	SNP	*	func_cds	homalt	99.9642	99.9284	100.0000	20.9745	6974	5	6974	0	0
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9638	99.9277	100.0000	58.3062	1382	1	1408	0	0
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9638	99.9277	100.0000	57.4376	1382	1	1382	0	0
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9638	99.9277	100.0000	57.3061	1382	1	1382	0	0
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9638	100.0000	99.9275	37.9915	2758	0	2758	2	2	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9638	99.9277	100.0000	56.9470	1382	1	1382	0	0
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9637	99.9275	100.0000	36.4245	2756	2	2756	0	0
dgrover-gatk	SNP	tv	HG002complexvar	homalt	99.9637	99.9411	99.9863	22.7977	95055	56	95040	13	11	84.6154
eyeh-varpipe	SNP	tv	*	homalt	99.9630	99.9676	99.9583	19.9401	377001	122	371165	155	57	36.7742
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9629	99.9555	99.9703	35.1476	6742	3	6742	2	2	100.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9629	99.9555	99.9703	35.4085	6742	3	6742	2	2	100.0000
cchapple-custom	SNP	ti	func_cds	homalt	99.9621	99.9242	100.0000	19.3326	5271	4	5270	0	0
jlack-gatk	SNP	ti	func_cds	homalt	99.9621	99.9242	100.0000	19.9058	5271	4	5271	0	0
rpoplin-dv42	SNP	ti	*	*	99.9621	99.9459	99.9782	17.6958	2084383	1128	2084320	454	276	60.7930
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9618	99.9237	100.0000	35.5315	1310	1	1310	0	0
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9618	99.9237	100.0000	34.5327	1310	1	1310	0	0
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9618	99.9237	100.0000	35.8158	1310	1	1310	0	0
jli-custom	SNP	*	HG002complexvar	homalt	99.9614	99.9404	99.9823	19.9145	288402	172	288385	51	37	72.5490
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9614	99.9228	100.0000	59.5375	3884	3	3884	0	0
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9614	99.9743	99.9486	59.3220	3886	1	3886	2	2	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9604	99.9703	99.9505	48.8948	10099	3	10099	5	5	100.0000
ckim-dragen	SNP	tv	HG002complexvar	homalt	99.9600	99.9306	99.9895	22.9484	95045	66	95148	10	10	100.0000
hfeng-pmm3	SNP	ti	segdup	homalt	99.9600	99.9600	99.9600	88.1690	7502	3	7502	3	3	100.0000
hfeng-pmm3	SNP	ti	*	*	99.9596	99.9417	99.9775	17.0194	2084295	1216	2084236	469	46	9.8081
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9589	99.9507	99.9671	54.6457	6085	3	6085	2	2	100.0000
rpoplin-dv42	SNP	*	*	*	99.9587	99.9447	99.9728	19.0681	3052930	1689	3052766	832	433	52.0433

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