PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54401-54450 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 56.7762 | 0.0000 | 0.0000 | 6305 | 4800 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 49.6365 | 0.0000 | 0.0000 | 6965 | 7067 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 46.7074 | 0.0000 | 0.0000 | 7802 | 8902 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 58.7303 | 0.0000 | 0.0000 | 6152 | 4323 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 15.4153 | 0.0000 | 0.0000 | 193 | 1059 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 78.1308 | 0.0000 | 0.0000 | 418 | 117 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 18.7500 | 0.0000 | 0.0000 | 3 | 13 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 45.6919 | 0.0000 | 0.0000 | 1225 | 1456 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 18.1590 | 0.0000 | 0.0000 | 217 | 978 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 65.3304 | 0.0000 | 0.0000 | 603 | 320 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 29.6000 | 0.0000 | 0.0000 | 37 | 88 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 18 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 36.2903 | 0.0000 | 0.0000 | 45 | 79 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 36.0000 | 0.0000 | 0.0000 | 45 | 80 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 34.0909 | 0.0000 | 0.0000 | 45 | 87 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 6 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 20 | 20 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 21 | 21 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 48.8372 | 0.0000 | 0.0000 | 21 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 52.3810 | 0.0000 | 0.0000 | 11 | 10 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 52.3810 | 0.0000 | 0.0000 | 11 | 10 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 52.1739 | 0.0000 | 0.0000 | 12 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 3 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 3 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 3 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_siren | hetalt | 0.0000 | 32.7935 | 0.0000 | 0.0000 | 81 | 166 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | segdup | hetalt | 0.0000 | 44.6154 | 0.0000 | 0.0000 | 58 | 72 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | tech_badpromoters | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 22.5352 | 85.7143 | 0 | 0 | 16 | 55 | 6 | 10.9091 | |
| gduggal-snapvard | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 23.5294 | 84.9558 | 0 | 0 | 16 | 52 | 5 | 9.6154 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 35.5556 | 72.5610 | 0 | 0 | 16 | 29 | 6 | 20.6897 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 37.2093 | 71.1409 | 0 | 0 | 16 | 27 | 5 | 18.5185 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 90.7407 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 89.7959 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 22.2222 | 88.8889 | 0 | 0 | 4 | 14 | 1 | 7.1429 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 22.2222 | 88.1579 | 0 | 0 | 4 | 14 | 1 | 7.1429 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 21.7391 | 91.7857 | 0 | 0 | 5 | 18 | 3 | 16.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 21.7391 | 91.3858 | 0 | 0 | 5 | 18 | 3 | 16.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 12.5000 | 92.7928 | 0 | 0 | 1 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 12.5000 | 92.0792 | 0 | 0 | 1 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 21.7391 | 91.7857 | 0 | 0 | 5 | 18 | 3 | 16.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 21.7391 | 91.3858 | 0 | 0 | 5 | 18 | 3 | 16.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 14.2857 | 87.0370 | 0 | 0 | 1 | 6 | 1 | 16.6667 | |