PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54251-54300 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 36.3636 | 0.0000 | 0.0000 | 36 | 63 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | segdup | hetalt | 0.0000 | 55.1020 | 0.0000 | 0.0000 | 27 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.4290 | 0.0000 | 0.0000 | 9 | 2089 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.4300 | 0.0000 | 0.0000 | 9 | 2084 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | func_cds | * | 0.0000 | 0.0000 | 60.0000 | 61.5385 | 0 | 12 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | func_cds | het | 0.0000 | 0.0000 | 60.0000 | 58.3333 | 0 | 9 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 67.1429 | 0 | 206 | 23 | 69 | 23 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 24.1758 | 67.1480 | 0 | 95 | 22 | 69 | 23 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 66.6667 | 0 | 25 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 55.5556 | 0 | 122 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 205 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 37.8378 | 72.5926 | 0 | 108 | 14 | 23 | 11 | 47.8261 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 36.1111 | 72.9323 | 0 | 66 | 13 | 23 | 11 | 47.8261 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 24 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 35 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 16.9811 | 59.8485 | 0 | 87 | 9 | 44 | 12 | 27.2727 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.9811 | 59.5420 | 0 | 27 | 9 | 44 | 12 | 27.2727 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 28.1250 | 61.4458 | 0 | 497 | 27 | 69 | 24 | 34.7826 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 28.4211 | 61.3821 | 0 | 133 | 27 | 68 | 23 | 33.8235 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 36.7347 | 63.4328 | 0 | 414 | 18 | 31 | 12 | 38.7097 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 37.5000 | 63.6364 | 0 | 106 | 18 | 30 | 11 | 36.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 71.4286 | 0 | 61 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 205 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 38.3333 | 68.9119 | 0 | 47 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 38.3333 | 68.7500 | 0 | 15 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 28.0220 | 59.5556 | 0 | 388 | 51 | 131 | 41 | 31.2977 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 27.3743 | 59.8655 | 0 | 168 | 49 | 130 | 40 | 30.7692 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 25.0000 | 0 | 45 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 44.4444 | 57.1429 | 0 | 37 | 12 | 15 | 5 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 44.4444 | 57.1429 | 0 | 16 | 12 | 15 | 5 | 33.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 87.5000 | 84.6154 | 0 | 6 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 87.5000 | 84.3137 | 0 | 3 | 7 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 93.9394 | 0 | 4 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 93.9394 | 0 | 2 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 94.7368 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 94.7368 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 92.6829 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 93.0233 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 4 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 2 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | * | hetalt | 0.0000 | 36.5106 | 0.0000 | 0.0000 | 4087 | 7107 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | hetalt | 0.0000 | 41.9710 | 0.0000 | 0.0000 | 724 | 1001 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | hetalt | 0.0000 | 36.5157 | 0.0000 | 0.0000 | 4081 | 7095 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 25.4181 | 0.0000 | 0.0000 | 228 | 669 | 0 | 0 | 0 | ||