PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54151-54200 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 98.4375 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 30.7692 | 97.7113 | 0 | 0 | 4 | 9 | 3 | 33.3333 | |
| gduggal-snapvard | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 25.0000 | 97.6285 | 0 | 0 | 3 | 9 | 3 | 33.3333 | |
| gduggal-snapvard | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3871 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | * | hetalt | 0.0000 | 1.3451 | 0.0000 | 0.0000 | 26 | 1907 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.8097 | 0.0000 | 0.0000 | 2 | 245 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 1.3485 | 0.0000 | 0.0000 | 26 | 1902 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.0256 | 0.0000 | 0.0000 | 10 | 965 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.6229 | 0.0000 | 0.0000 | 21 | 1273 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 1.3465 | 0.0000 | 0.0000 | 26 | 1905 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.1478 | 0.0000 | 0.0000 | 8 | 689 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.5461 | 0.0000 | 0.0000 | 25 | 1592 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.8008 | 0.0000 | 0.0000 | 17 | 927 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 1.5161 | 0.0000 | 0.0000 | 25 | 1624 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 1.3465 | 0.0000 | 0.0000 | 26 | 1905 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.7653 | 0.0000 | 0.0000 | 6 | 778 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.6834 | 0.0000 | 0.0000 | 3 | 436 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 3.3537 | 0.0000 | 0.0000 | 11 | 317 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.8571 | 0.0000 | 0.0000 | 3 | 347 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 3.9216 | 0.0000 | 0.0000 | 2 | 49 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | * | hetalt | 0.0000 | 62.9283 | 0.0000 | 0.0000 | 6447 | 3798 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 63.6095 | 0.0000 | 0.0000 | 860 | 492 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 62.9699 | 0.0000 | 0.0000 | 6433 | 3783 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 31.2294 | 0.0000 | 0.0000 | 569 | 1253 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 66.9535 | 0.0000 | 0.0000 | 6224 | 3072 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 60.0151 | 0.0000 | 0.0000 | 5576 | 3715 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 56.5217 | 0.0000 | 0.0000 | 39 | 30 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 58.1081 | 0.0000 | 0.0000 | 43 | 31 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 54.0541 | 0.0000 | 0.0000 | 20 | 17 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 31.0612 | 0.0000 | 0.0000 | 401 | 890 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 60.7906 | 0.0000 | 0.0000 | 4921 | 3174 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 66.2224 | 0.0000 | 0.0000 | 4521 | 2306 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 60.7121 | 0.0000 | 0.0000 | 4962 | 3211 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 60.0151 | 0.0000 | 0.0000 | 5576 | 3715 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 66.8748 | 0.0000 | 0.0000 | 4605 | 2281 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 19.3483 | 0.0000 | 0.0000 | 95 | 396 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 92.9440 | 0.0000 | 0.0000 | 382 | 29 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 75.0000 | 99.9757 | 0 | 1 | 21 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 74.0741 | 99.9731 | 0 | 0 | 20 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9933 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 62.1567 | 0.0000 | 0.0000 | 928 | 565 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 26.6154 | 0.0000 | 0.0000 | 173 | 477 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 76.6234 | 0.0000 | 0.0000 | 354 | 108 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 38.7755 | 0.0000 | 0.0000 | 19 | 30 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 78.5714 | 0.0000 | 0.0000 | 11 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 53.1915 | 0.0000 | 0.0000 | 25 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 52.0833 | 0.0000 | 0.0000 | 25 | 23 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 49.0196 | 0.0000 | 0.0000 | 25 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 69.2308 | 0.0000 | 0.0000 | 9 | 4 | 0 | 0 | 0 | ||