PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53801-53850 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 100.0000 | 98.1818 | 0 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 0.0000 | 100.0000 | 98.8506 | 0 | 4 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.8674 | 0 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 25.0000 | 0.0000 | 96.1538 | 1 | 3 | 0 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 99.1228 | 1 | 2 | 0 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 93.3333 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 2.6895 | 75.5383 | 0 | 0 | 11 | 398 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 1.7730 | 70.9278 | 0 | 0 | 5 | 277 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 4.7244 | 81.1852 | 0 | 0 | 6 | 121 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 13.5135 | 79.8913 | 0 | 0 | 10 | 64 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 9.7561 | 77.0950 | 0 | 0 | 4 | 37 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 18.1818 | 81.8681 | 0 | 0 | 6 | 27 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 3.0769 | 55.1724 | 0 | 0 | 2 | 63 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 4.7619 | 50.0000 | 0 | 0 | 2 | 40 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.0909 | 95.4167 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.6667 | 94.5455 | 0 | 0 | 1 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 2.2099 | 73.5766 | 0 | 0 | 4 | 177 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 1.5625 | 65.4054 | 0 | 0 | 2 | 126 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 3.7736 | 82.9582 | 0 | 0 | 2 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 10.5263 | 92.2343 | 0 | 0 | 6 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 10.0000 | 89.5288 | 0 | 0 | 4 | 36 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 11.7647 | 95.0292 | 0 | 0 | 2 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 91.1504 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.6667 | 88.0000 | 0 | 0 | 1 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 93.5484 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 85.9649 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 82.1429 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 89.6552 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 13.3333 | 93.6441 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 8.3333 | 90.9091 | 0 | 0 | 1 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 97.0874 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 18.1818 | 92.8571 | 0 | 0 | 2 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 11.1111 | 89.2857 | 0 | 0 | 1 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 97.1014 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 14.8148 | 93.4307 | 0 | 0 | 4 | 23 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 10.5263 | 90.7767 | 0 | 0 | 2 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 96.0396 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 10.5263 | 92.2343 | 0 | 0 | 6 | 51 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 10.0000 | 89.5288 | 0 | 0 | 4 | 36 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 11.7647 | 95.0292 | 0 | 0 | 2 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 16.6667 | 93.4307 | 0 | 0 | 3 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 15.3846 | 89.5161 | 0 | 0 | 2 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 20.0000 | 96.6216 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 33.3333 | 94.4444 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 33.3333 | 91.4286 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 96.4602 | 95.9986 | 0 | 0 | 109 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 58.3333 | 88.4615 | 0 | 0 | 7 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 96.4602 | 89.1137 | 0 | 0 | 109 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 82.9787 | 90.9615 | 0 | 0 | 39 | 8 | 0 | 0.0000 | |