PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53601-53650 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | * | * | hetalt | 0.0000 | 93.6165 | 0.0000 | 0.0000 | 23626 | 1611 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | HG002complexvar | hetalt | 0.0000 | 90.1865 | 0.0000 | 0.0000 | 3336 | 363 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 93.6418 | 0.0000 | 0.0000 | 23579 | 1601 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | decoy | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | func_cds | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 4 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.5063 | 0.0000 | 0.0000 | 3308 | 516 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.5114 | 0.0000 | 0.0000 | 14725 | 692 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 93.7863 | 0.0000 | 0.0000 | 15667 | 1038 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.8263 | 0.0000 | 0.0000 | 145 | 22 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 96.1373 | 0.0000 | 0.0000 | 224 | 9 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.4545 | 0.0000 | 0.0000 | 126 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.2651 | 0.0000 | 0.0000 | 2349 | 374 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 93.6792 | 0.0000 | 0.0000 | 12894 | 870 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.4255 | 0.0000 | 0.0000 | 10597 | 508 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 93.6075 | 0.0000 | 0.0000 | 13135 | 897 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 93.7863 | 0.0000 | 0.0000 | 15667 | 1038 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 95.4081 | 0.0000 | 0.0000 | 9994 | 481 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 74.7604 | 0.0000 | 0.0000 | 936 | 316 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 95.3271 | 0.0000 | 0.0000 | 510 | 25 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 14 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 96.5697 | 0.0000 | 0.0000 | 2590 | 92 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 92.1339 | 0.0000 | 0.0000 | 1101 | 94 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 98.3749 | 0.0000 | 0.0000 | 908 | 15 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 92.0000 | 0.0000 | 0.0000 | 115 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 87.8788 | 0.0000 | 0.0000 | 29 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 83.8710 | 0.0000 | 0.0000 | 104 | 20 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 84.0000 | 0.0000 | 0.0000 | 105 | 20 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 83.3333 | 0.0000 | 0.0000 | 110 | 22 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 10 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 95.0000 | 0.0000 | 0.0000 | 38 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 92.8571 | 0.0000 | 0.0000 | 39 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 90.6977 | 0.0000 | 0.0000 | 39 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 95.2381 | 0.0000 | 0.0000 | 20 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 95.2381 | 0.0000 | 0.0000 | 20 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 91.3043 | 0.0000 | 0.0000 | 21 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 6 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 6 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 6 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_siren | hetalt | 0.0000 | 88.6640 | 0.0000 | 0.0000 | 219 | 28 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | segdup | hetalt | 0.0000 | 93.8462 | 0.0000 | 0.0000 | 122 | 8 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 89.8305 | 95.8245 | 0 | 0 | 53 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 84.6154 | 96.1155 | 0 | 0 | 33 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 100.0000 | 95.1100 | 0 | 0 | 20 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 89.8305 | 89.5390 | 0 | 0 | 53 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 84.6154 | 90.1515 | 0 | 0 | 33 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 100.0000 | 88.0952 | 0 | 0 | 20 | 0 | 0 | ||