PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53451-53500 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 33.3333 | 95.9322 | 0 | 0 | 4 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 98.5294 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 60.0000 | 99.0619 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 60.0000 | 98.8610 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7528 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 100.0000 | 93.7500 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 8.8235 | 73.0159 | 0 | 0 | 3 | 31 | 4 | 12.9032 | |
| anovak-vg | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 8.8235 | 71.9008 | 0 | 0 | 3 | 31 | 4 | 12.9032 | |
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 87.6777 | 1 | 0 | 0 | 26 | 2 | 7.6923 | |
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 86.9347 | 1 | 0 | 0 | 26 | 2 | 7.6923 | |
| anovak-vg | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | * | hetalt | 0.0000 | 16.4511 | 0.0000 | 0.0000 | 318 | 1615 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 17.4089 | 0.0000 | 0.0000 | 43 | 204 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 16.4938 | 0.0000 | 0.0000 | 318 | 1610 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 11.1795 | 0.0000 | 0.0000 | 109 | 866 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 20.0155 | 0.0000 | 0.0000 | 259 | 1035 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 16.4164 | 0.0000 | 0.0000 | 317 | 1614 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 18.1818 | 0.0000 | 0.0000 | 2 | 9 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 25.0000 | 0.0000 | 96.2264 | 1 | 3 | 0 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 97.1429 | 1 | 0 | 0 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 36.8421 | 0.0000 | 0.0000 | 7 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 41.6667 | 0.0000 | 0.0000 | 5 | 7 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 11.3343 | 0.0000 | 0.0000 | 79 | 618 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 16.9450 | 0.0000 | 0.0000 | 274 | 1343 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 20.6568 | 0.0000 | 0.0000 | 195 | 749 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 16.7981 | 0.0000 | 0.0000 | 277 | 1372 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 16.4164 | 0.0000 | 0.0000 | 317 | 1614 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 19.7704 | 0.0000 | 0.0000 | 155 | 629 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 9.1116 | 0.0000 | 0.0000 | 40 | 399 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 22.5610 | 0.0000 | 0.0000 | 74 | 254 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 11.4286 | 0.0000 | 0.0000 | 40 | 310 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 25.4902 | 0.0000 | 0.0000 | 13 | 38 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 2 | 24 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 2 | 24 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 2 | 28 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 6.4516 | 0.0000 | 0.0000 | 2 | 29 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | * | hetalt | 0.0000 | 29.0971 | 0.0000 | 0.0000 | 2981 | 7264 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 35.5769 | 0.0000 | 0.0000 | 481 | 871 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 29.0525 | 0.0000 | 0.0000 | 2968 | 7248 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 16.7947 | 0.0000 | 0.0000 | 306 | 1516 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 30.4432 | 0.0000 | 0.0000 | 2830 | 6466 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 28.3070 | 0.0000 | 0.0000 | 2630 | 6661 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 24.6377 | 0.0000 | 0.0000 | 17 | 52 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 35.1351 | 0.0000 | 0.0000 | 26 | 48 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 40.5405 | 0.0000 | 0.0000 | 15 | 22 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 16.8087 | 0.0000 | 0.0000 | 217 | 1074 | 0 | 0 | 0 | ||