PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53351-53400 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 2 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 2 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 2 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_siren | hetalt | 0.0000 | 27.5304 | 0.0000 | 0.0000 | 68 | 179 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | segdup | hetalt | 0.0000 | 21.5385 | 0.0000 | 0.0000 | 28 | 102 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | tech_badpromoters | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 20.0000 | 90.1961 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 25.0000 | 90.2439 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 33.3333 | 85.7143 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 33.3333 | 83.3333 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 84.6154 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 80.0000 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 50.0000 | 88.8889 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 50.0000 | 88.8889 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 83.3333 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 90.2439 | 94.3409 | 0 | 0 | 74 | 8 | 5 | 62.5000 | |
| anovak-vg | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 91.6667 | 85.1546 | 0 | 0 | 66 | 6 | 4 | 66.6667 | |
| anovak-vg | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 13.6364 | 74.7449 | 0 | 0 | 27 | 171 | 11 | 6.4328 | |
| anovak-vg | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 28.5714 | 81.0811 | 0 | 0 | 2 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 13.3333 | 86.7257 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 7.1429 | 86.4078 | 0 | 0 | 1 | 13 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 85.7143 | 96.5000 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 20.4545 | 88.0109 | 0 | 1 | 27 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 15.3226 | 87.4747 | 0 | 1 | 19 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.7928 | 0 | 0 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 84.9057 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 14.2857 | 84.7826 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 42.8571 | 88.8889 | 0 | 0 | 6 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 33.3333 | 87.8788 | 0 | 0 | 4 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 92.5926 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 62.5000 | 92.0000 | 0 | 0 | 5 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 92.2078 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 91.3043 | 0 | 0 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 14.8148 | 81.5068 | 0 | 0 | 8 | 46 | 3 | 6.5217 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 14.8148 | 80.1471 | 0 | 0 | 8 | 46 | 3 | 6.5217 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 16.0000 | 79.8387 | 0 | 0 | 8 | 42 | 3 | 7.1429 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.0000 | 78.3550 | 0 | 0 | 8 | 42 | 3 | 7.1429 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 85.4167 | 0 | 0 | 14 | 56 | 3 | 5.3571 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 16.4179 | 84.3091 | 0 | 0 | 11 | 56 | 3 | 5.3571 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.3396 | 0 | 0 | 3 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 20.4545 | 88.0109 | 0 | 1 | 27 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 15.3226 | 87.4747 | 0 | 1 | 19 | 105 | 4 | 3.8095 | |
| anovak-vg | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 92.7928 | 0 | 0 | 8 | 0 | 0 | ||