PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53251-53300 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 99.9954 | 0 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 99.7680 | 0 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 100.0000 | 99.7585 | 0 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 53.8462 | 64.8649 | 0 | 0 | 7 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 81.8182 | 0 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9942 | 0 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 0.0000 | 100.0000 | 99.9911 | 0 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 25.0000 | 78.9474 | 0 | 0 | 1 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 57.1429 | 83.3333 | 0 | 0 | 4 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | C1_5 | * | * | 0.0000 | 80.0000 | 0.0000 | 77.6571 | 8 | 2 | 0 | 391 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | * | het | 0.0000 | 77.7778 | 0.0000 | 78.8462 | 7 | 2 | 0 | 242 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 73.6842 | 1 | 0 | 0 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 71.4286 | 0.0000 | 75.2632 | 5 | 2 | 0 | 141 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 71.4286 | 0.0000 | 70.5128 | 5 | 2 | 0 | 115 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 100.0000 | 0.0000 | 46.8750 | 1 | 0 | 0 | 136 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0.0000 | 58.3333 | 1 | 0 | 0 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 75.5627 | 2 | 1 | 0 | 304 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 75.7212 | 2 | 1 | 0 | 202 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0.0000 | 77.9141 | 1 | 0 | 0 | 36 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 81.8182 | 1 | 0 | 0 | 18 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 58.1818 | 1 | 0 | 0 | 23 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 56.6667 | 1 | 0 | 0 | 13 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 80.1262 | 7 | 0 | 0 | 189 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 80.4124 | 7 | 0 | 0 | 133 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 75.0760 | 4 | 0 | 0 | 82 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 72.3577 | 4 | 0 | 0 | 68 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 78.5021 | 1 | 0 | 0 | 155 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 78.2857 | 1 | 0 | 0 | 114 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0.0000 | 96.7742 | 1 | 0 | 0 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0.0000 | 95.9184 | 1 | 0 | 0 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.2759 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||