PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52201-52250 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 46.1538 | 97.4104 | 0 | 0 | 6 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 30.0000 | 97.7925 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 93.8776 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 50.0000 | 98.9150 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 50.0000 | 98.7928 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.3104 | 0.0000 | 0.0000 | 6 | 1927 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 2.0243 | 0.0000 | 0.0000 | 5 | 242 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.3112 | 0.0000 | 0.0000 | 6 | 1922 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.1026 | 0.0000 | 0.0000 | 1 | 974 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.4637 | 0.0000 | 0.0000 | 6 | 1288 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3107 | 0.0000 | 0.0000 | 6 | 1925 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.1435 | 0.0000 | 0.0000 | 1 | 696 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.3711 | 0.0000 | 0.0000 | 6 | 1611 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5297 | 0.0000 | 0.0000 | 5 | 939 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3639 | 0.0000 | 0.0000 | 6 | 1643 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3107 | 0.0000 | 0.0000 | 6 | 1925 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.6378 | 0.0000 | 0.0000 | 5 | 779 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.3049 | 0.0000 | 0.0000 | 1 | 327 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.2857 | 0.0000 | 0.0000 | 1 | 349 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 3.8462 | 0.0000 | 0.0000 | 1 | 25 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 3.8462 | 0.0000 | 0.0000 | 1 | 25 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 3.3333 | 0.0000 | 0.0000 | 1 | 29 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | * | hetalt | 0.0000 | 0.3904 | 0.0000 | 0.0000 | 40 | 10205 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 2.8846 | 0.0000 | 0.0000 | 39 | 1313 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 0.3622 | 0.0000 | 0.0000 | 37 | 10179 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2195 | 0.0000 | 0.0000 | 4 | 1818 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.3873 | 0.0000 | 0.0000 | 36 | 9260 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.2798 | 0.0000 | 0.0000 | 26 | 9265 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2324 | 0.0000 | 0.0000 | 3 | 1288 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.2347 | 0.0000 | 0.0000 | 19 | 8076 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2344 | 0.0000 | 0.0000 | 16 | 6811 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.2325 | 0.0000 | 0.0000 | 19 | 8154 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.2798 | 0.0000 | 0.0000 | 26 | 9265 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.3631 | 0.0000 | 0.0000 | 25 | 6861 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 1.7032 | 0.0000 | 0.0000 | 7 | 404 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 82.6087 | 99.9777 | 0 | 1 | 19 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 80.0000 | 99.9773 | 0 | 0 | 16 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9800 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.2679 | 0.0000 | 0.0000 | 4 | 1489 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.3077 | 0.0000 | 0.0000 | 2 | 648 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 7.1429 | 0.0000 | 0.0000 | 1 | 13 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 2.1277 | 0.0000 | 0.0000 | 1 | 46 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 2.0833 | 0.0000 | 0.0000 | 1 | 47 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 1.9608 | 0.0000 | 0.0000 | 1 | 50 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 1 | 12 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||