PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52151-52200 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 71.4286 | 97.1429 | 0 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 57.1429 | 96.3565 | 0 | 0 | 32 | 24 | 12 | 50.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.6811 | 0 | 0 | 23 | 23 | 11 | 47.8261 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.0000 | 93.3775 | 0 | 0 | 9 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 55.1020 | 96.1986 | 0 | 0 | 27 | 22 | 12 | 54.5455 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 46.1538 | 96.6205 | 0 | 0 | 18 | 21 | 11 | 52.3810 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.0000 | 92.5926 | 0 | 0 | 9 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 59.7222 | 96.2284 | 0 | 0 | 43 | 29 | 12 | 41.3793 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 96.7213 | 0 | 0 | 28 | 28 | 11 | 39.2857 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 93.7500 | 92.0398 | 0 | 0 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.3237 | 0 | 0 | 62 | 62 | 17 | 27.4194 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 41.9048 | 96.6074 | 0 | 0 | 44 | 61 | 16 | 26.2295 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 94.7368 | 93.1655 | 0 | 0 | 18 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 61.2903 | 96.1634 | 0 | 0 | 38 | 24 | 10 | 41.6667 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 54.0000 | 96.6148 | 0 | 0 | 27 | 23 | 9 | 39.1304 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 91.6667 | 91.3669 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 33.3333 | 94.9721 | 0 | 0 | 3 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 25.0000 | 94.7712 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 56.5217 | 91.5751 | 0 | 0 | 26 | 20 | 8 | 40.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 52.3810 | 91.4634 | 0 | 0 | 22 | 20 | 8 | 40.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.5926 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 50.0000 | 95.1515 | 0 | 0 | 4 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 42.8571 | 95.2381 | 0 | 0 | 3 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.4444 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 85.7143 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 42.8571 | 96.0452 | 0 | 0 | 3 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 20.0000 | 96.8944 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 54.5455 | 96.2963 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 37.5000 | 96.9925 | 0 | 0 | 3 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.3226 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 58.3333 | 96.3526 | 0 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 44.4444 | 96.9595 | 0 | 0 | 4 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 58.3333 | 96.4706 | 0 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 44.4444 | 97.0588 | 0 | 0 | 4 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.1765 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 33.3333 | 97.2222 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 33.3333 | 97.5207 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.4762 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 33.3333 | 97.6000 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 33.3333 | 98.2456 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 33.3333 | 98.4536 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.3077 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 33.3333 | 98.4925 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |