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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
51701-51750 / 86044 show all
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
2.8165
1.5003
22.9630
60.5263
2919043110470
67.3077
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
2.7934
1.4257
68.7500
77.7778
74841153
60.0000
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
2.7557
1.4642
23.3645
66.5102
47316350164113
68.9024
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
2.7260
1.4416
25.0000
74.2765
191299206043
71.6667
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
2.6388
1.3951
24.3243
79.2910
251767278448
57.1429
gduggal-bwavardINDELI6_15HG002compoundhet*
2.5796
2.0283
3.5425
37.8475
178859817948744796
98.3997
jpowers-varprowlINDELI6_15HG002compoundhet*
2.5440
1.9257
3.7472
39.3654
169860716943414310
99.2859
eyeh-varpipeINDELI6_15HG002compoundhethomalt
2.5353
74.1935
1.2897
22.4317
2382619901987
99.8492
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
2.5316
100.0000
1.2821
72.3404
101772
2.5974
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_51to200*
2.5000
100.0000
1.2658
65.6522
101781
1.2821
eyeh-varpipeINDELI16_PLUSHG002compoundhethomalt
2.4742
66.6667
1.2605
25.1572
213235234
99.5745
gduggal-snapfbSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
2.4691
100.0000
1.2500
60.9756
101791
1.2658
eyeh-varpipeINDELI16_PLUSHG002compoundhethet
2.3810
4.2553
1.6529
50.2058
2452119119
100.0000
gduggal-snapvardINDELI16_PLUS**
2.3476
1.2075
42.0851
50.8200
77630010981511872
57.7101
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
2.2831
1.1628
62.5000
77.7778
185533
100.0000
ciseli-customINDELI6_15HG002compoundhet*
2.2462
1.5497
4.0797
35.3639
136864012930332934
96.7359
gduggal-bwavardINDELI16_PLUSHG002compoundhet*
2.2297
1.8199
2.8777
49.0469
3921044013501263
93.5556
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
2.1951
1.1236
47.3684
61.6162
188182012
60.0000
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
2.1108
1.1142
20.0000
87.1795
4355281
12.5000
gduggal-snapfbSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
1.9417
100.0000
0.9804
62.5000
1011012
1.9802
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
1.9417
100.0000
0.9804
62.5000
1011012
1.9802
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
1.8692
100.0000
0.9434
71.7333
1011052
1.9048
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
1.8576
0.9740
20.0000
60.0000
661062417
70.8333
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
1.8131
0.9259
43.2836
64.1711
1107293822
57.8947
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
1.8111
0.9524
18.4211
68.8525
772873122
70.9677
gduggal-snapvardINDELI16_PLUSHG002complexvar*
1.7978
0.9167
46.1538
59.1623
121297216252147
58.3333
ghariani-varprowlINDELI16_PLUSHG002compoundhet*
1.7907
1.3532
2.6460
56.7653
2921142910671059
99.2502
gduggal-snapvardINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
1.7852
0.9174
32.9730
66.4247
443212224894
37.9032
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
1.5625
0.7874
100.0000
66.6667
1126100
eyeh-varpipeINDELD6_15HG002compoundhethomalt
1.5501
83.3333
0.7823
29.2688
2042835513544
99.8029
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
1.5317
0.7843
32.5163
68.9024
121518199413192
46.4891
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
1.5317
0.7843
32.5163
68.9024
121518199413192
46.4891
gduggal-snapvardINDELI16_PLUS*homalt
1.5180
0.7687
60.0000
43.7086
121549513422
64.7059
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
1.4925
0.7519
100.0000
83.3333
3396300
jpowers-varprowlINDELI16_PLUSHG002compoundhet*
1.3665
1.0266
2.0427
54.2286
2221212210551050
99.5261
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
1.3346
25.9259
0.6849
58.5227
72011450
0.0000
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
1.3072
0.6579
100.0000
86.2745
6906700
gduggal-snapvardINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
1.2251
0.6250
30.7692
75.3555
3477163611
30.5556
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
1.1561
0.5814
100.0000
93.3333
1171100
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
1.1095
0.5618
44.1176
64.0212
1177303822
57.8947
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
1.1080
0.5587
66.6667
84.2105
1178210
0.0000
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
1.1019
0.5540
100.0000
82.3529
2359300
ciseli-customINDELD16_PLUSHG002compoundhethomalt
1.0601
75.0000
0.5338
31.6717
62611181065
95.2594
gduggal-snapvardINDELI16_PLUSHG002compoundhet*
0.9920
0.5133
14.7343
45.8824
11213261353189
53.5411
ciseli-customINDELD6_15HG002compoundhethomalt
0.9875
87.5000
0.4965
31.5704
2132346094348
94.3372
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
0.9562
0.4804
100.0000
89.2308
61243700
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.9562
0.4804
100.0000
89.2308
61243700
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
0.9434
0.4739
100.0000
77.7778
1210200
ciseli-customINDELI16_PLUSHG002compoundhethomalt
0.9434
33.3333
0.4785
52.5000
122416387
93.0288
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.8163
0.4098
100.0000
90.4762
2486200