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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-score RecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
51601-51650 / 86044 show all
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
6.7797
3.5088
100.0000
99.9898
255100
ckim-dragenINDELI16_PLUSHG002compoundhethomalt
6.7416
100.0000
3.4884
70.2422
3038383
100.0000
jpowers-varprowlINDELI6_15HG002compoundhethet
6.7114
57.6923
3.5629
37.9971
1208815040604050
99.7537
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
6.7039
3.6585
40.0000
94.4444
379232
66.6667
ciseli-customINDELD6_15HG002compoundhet*
6.6832
5.5814
8.3271
39.0416
504852655460995283
86.6208
ciseli-customINDELI16_PLUSmap_l100_m1_e0*
6.6667
3.8462
25.0000
96.4602
125131
33.3333
ciseli-customINDELI16_PLUSmap_l100_m2_e0*
6.6667
3.8462
25.0000
97.0149
125131
33.3333
ciseli-customINDELI16_PLUSmap_l100_m2_e1*
6.6667
3.8462
25.0000
97.1223
125131
33.3333
ndellapenna-hhgaINDELD16_PLUSHG002compoundhethomalt
6.6667
62.5000
3.5211
41.5638
53513782
59.8540
gduggal-snapvardINDELI16_PLUSHG002compoundhethet
6.6071
4.2553
14.7700
45.8005
24561352188
53.4091
bgallagher-sentieonINDELI16_PLUSHG002compoundhethomalt
6.5934
100.0000
3.4091
71.4286
3038585
100.0000
gduggal-bwavardINDELI6_15HG002compoundhethet
6.3867
74.0385
3.3373
37.4814
1545416848664788
98.3970
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
6.3636
3.3981
50.0000
96.8254
7199221
50.0000
ciseli-customINDELD16_PLUSHG002compoundhet*
6.2397
5.0406
8.1875
34.9864
118222311713121251
95.3506
mlin-fermikitINDELI16_PLUSHG002compoundhethet
6.2171
57.4468
3.2864
65.0533
272014412412
100.0000
gduggal-bwafbINDELD16_PLUSHG002compoundhethomalt
6.1901
87.5000
3.2086
48.1994
716181181
100.0000
qzeng-customINDELD16_PLUSHG002compoundhethomalt
6.1856
100.0000
3.1915
36.2712
80618292
50.5495
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
6.1644
3.6217
20.6897
83.3652
18479186958
84.0580
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
6.0241
3.1056
100.0000
68.7500
5156500
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
6.0167
3.3981
26.2295
42.4528
7199329074
82.2222
egarrison-hhgaINDELI16_PLUSHG002compoundhethomalt
5.9406
100.0000
3.0612
65.7343
3039569
72.6316
ndellapenna-hhgaINDELI16_PLUSHG002compoundhethomalt
5.9406
100.0000
3.0612
66.3230
3039569
72.6316
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
5.9197
3.2787
30.4348
64.6154
25971614
87.5000
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
5.8388
3.2419
29.3478
73.4870
13388276539
60.0000
ciseli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
5.7971
3.3816
20.2899
80.2292
14400145547
85.4545
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
5.7762
27.5862
3.2258
99.1721
2463298700
0.0000
gduggal-snapvardINDELD16_PLUSmap_sirenhomalt
5.7143
2.9412
100.0000
92.8571
133100
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
5.6818
2.9412
83.3333
90.9091
266511
100.0000
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
5.6604
2.9126
100.0000
95.4545
6200200
ciseli-customINDEL*HG002compoundhethomalt
5.5419
79.0087
2.8717
55.4798
5421445591890717855
94.4359
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
5.5046
2.9126
50.0000
97.1429
6200111
100.0000
qzeng-customINDELI16_PLUSHG002compoundhethomalt
5.3812
100.0000
2.7650
59.0566
306211173
81.9905
gduggal-snapplatINDELD6_15HG002compoundhethomalt
5.2905
29.1667
2.9091
54.3189
7178267226
84.6442
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
5.1744
2.8363
29.4574
72.6502
1013460114273176
64.4689
gduggal-bwavardINDELI16_PLUSHG002compoundhethet
5.1421
59.5745
2.6870
48.2525
28193713401253
93.5075
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
4.9557
2.7624
24.0506
74.0984
10352196043
71.6667
gduggal-snapplatINDELI6_15HG002compoundhethomalt
4.7937
25.8065
2.6423
56.0714
82313479433
90.3967
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
4.7580
2.6205
25.8123
79.0152
1314868143411255
62.0438
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
4.7580
2.6205
25.8123
79.0152
1314868143411255
62.0438
ghariani-varprowlINDELI16_PLUSHG002compoundhethet
4.7472
34.0426
2.5515
55.6957
163126993986
99.2951
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
4.7393
2.5381
35.7143
92.6316
5192597
77.7778
gduggal-snapvardINDELD16_PLUSHG002complexvarhomalt
4.7297
2.4221
100.0000
77.7778
7282800
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
4.7196
2.6063
24.9453
76.2474
1063961114343228
66.4723
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
4.7170
2.5381
33.3333
92.1875
51925107
70.0000
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
4.7064
2.4535
57.5758
90.4348
29115319144
28.5714
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
4.7019
2.5478
30.4348
66.6667
415371614
87.5000
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
4.6990
2.6273
22.2222
79.1506
16593248448
57.1429
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
4.6119
2.5026
29.3478
74.2297
24935276539
60.0000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
4.6004
2.3747
73.3333
89.3617
93701142
50.0000
jlack-gatkINDELI16_PLUSHG002compoundhethomalt
4.5113
100.0000
2.3077
65.0538
303127123
96.8504