PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51501-51550 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | het | 10.2564 | 6.6667 | 22.2222 | 95.4315 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | het | 10.2564 | 6.6667 | 22.2222 | 95.5882 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | HG002compoundhet | * | 10.2161 | 9.0332 | 11.7555 | 64.4950 | 2706 | 27250 | 3448 | 25883 | 22293 | 86.1299 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 10.1868 | 6.3158 | 26.3158 | 62.7451 | 6 | 89 | 5 | 14 | 2 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | homalt | 10.1695 | 100.0000 | 5.3571 | 68.1818 | 3 | 0 | 3 | 53 | 52 | 98.1132 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | homalt | 10.1695 | 100.0000 | 5.3571 | 67.2515 | 3 | 0 | 3 | 53 | 52 | 98.1132 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 10.1449 | 100.0000 | 5.3435 | 81.7294 | 9 | 0 | 7 | 124 | 2 | 1.6129 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 10.1232 | 5.6911 | 45.7627 | 90.8385 | 28 | 464 | 27 | 32 | 27 | 84.3750 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 10.0854 | 5.6911 | 44.2623 | 90.6728 | 28 | 464 | 27 | 34 | 28 | 82.3529 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 10.0000 | 5.2632 | 100.0000 | 98.9583 | 1 | 18 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | het | 10.0000 | 6.2500 | 25.0000 | 97.4026 | 1 | 15 | 1 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 9.9949 | 5.3085 | 85.2941 | 78.6164 | 37 | 660 | 58 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 9.9792 | 5.2980 | 85.7143 | 70.0000 | 8 | 143 | 18 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D6_15 | HG002compoundhet | * | 9.9769 | 8.5262 | 12.0225 | 38.0227 | 770 | 8261 | 768 | 5620 | 5568 | 99.0747 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 9.8728 | 5.6604 | 38.5965 | 58.6957 | 6 | 100 | 22 | 35 | 3 | 8.5714 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 9.8376 | 5.2308 | 82.4742 | 81.6635 | 51 | 924 | 80 | 17 | 16 | 94.1176 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 9.8039 | 5.2083 | 83.3333 | 88.7850 | 10 | 182 | 10 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 9.8039 | 5.2083 | 83.3333 | 89.0909 | 10 | 182 | 10 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 9.8039 | 5.1546 | 100.0000 | 72.7273 | 5 | 92 | 6 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | HG002compoundhet | homalt | 9.7782 | 77.5076 | 5.2183 | 58.7244 | 255 | 74 | 257 | 4668 | 4563 | 97.7506 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_siren | * | 9.6970 | 5.5944 | 36.3636 | 92.6174 | 8 | 135 | 8 | 14 | 6 | 42.8571 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 9.6774 | 5.0847 | 100.0000 | 77.7778 | 3 | 56 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 9.6515 | 5.2632 | 58.0645 | 68.3673 | 19 | 342 | 18 | 13 | 6 | 46.1538 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 9.6515 | 5.6250 | 33.9623 | 61.7329 | 27 | 453 | 36 | 70 | 34 | 48.5714 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 9.6000 | 100.0000 | 5.0420 | 75.4132 | 6 | 0 | 6 | 113 | 2 | 1.7699 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | * | 9.5470 | 5.2952 | 48.4536 | 72.9428 | 87 | 1556 | 94 | 100 | 53 | 53.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 9.4937 | 5.5556 | 32.6087 | 59.8253 | 23 | 391 | 30 | 62 | 18 | 29.0323 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 9.4488 | 5.6604 | 28.5714 | 87.7907 | 6 | 100 | 6 | 15 | 12 | 80.0000 | |
| gduggal-bwafb | INDEL | I6_15 | HG002compoundhet | homalt | 9.4162 | 80.6452 | 5.0000 | 41.3146 | 25 | 6 | 25 | 475 | 473 | 99.5789 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | * | 9.3750 | 5.6604 | 27.2727 | 96.1806 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | * | 9.3750 | 5.6604 | 27.2727 | 96.5839 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | * | 9.3750 | 5.6604 | 27.2727 | 96.6967 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 9.3373 | 5.7895 | 24.1150 | 76.0466 | 77 | 1253 | 109 | 343 | 228 | 66.4723 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 9.3220 | 7.7465 | 11.7021 | 43.7126 | 11 | 131 | 11 | 83 | 83 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 9.2308 | 5.0847 | 50.0000 | 85.3659 | 3 | 56 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 9.1482 | 5.4613 | 28.1579 | 72.1408 | 74 | 1281 | 107 | 273 | 176 | 64.4689 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 9.0909 | 4.7619 | 100.0000 | 99.9785 | 2 | 40 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 9.0909 | 4.7619 | 100.0000 | 83.3333 | 1 | 20 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 9.0909 | 4.7619 | 100.0000 | 83.3333 | 1 | 20 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m1_e0 | het | 9.0909 | 5.0000 | 50.0000 | 98.4375 | 1 | 19 | 1 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e0 | het | 9.0909 | 5.0000 | 50.0000 | 98.6014 | 1 | 19 | 1 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e1 | het | 9.0909 | 5.0000 | 50.0000 | 98.6207 | 1 | 19 | 1 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | homalt | 9.0909 | 4.7619 | 100.0000 | 95.8333 | 1 | 20 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 9.0082 | 7.4513 | 11.3874 | 43.3234 | 88 | 1093 | 87 | 677 | 676 | 99.8523 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 8.9302 | 5.4426 | 24.8629 | 78.7573 | 99 | 1720 | 136 | 411 | 255 | 62.0438 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 8.9302 | 5.4426 | 24.8629 | 78.7573 | 99 | 1720 | 136 | 411 | 255 | 62.0438 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 8.8851 | 13.8889 | 6.5319 | 87.2673 | 40 | 248 | 42 | 601 | 6 | 0.9983 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | * | 8.7912 | 4.6512 | 80.0000 | 97.2376 | 4 | 82 | 4 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 8.6957 | 4.7619 | 50.0000 | 75.0000 | 1 | 20 | 1 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | homalt | 8.6957 | 100.0000 | 4.5455 | 78.0731 | 3 | 0 | 3 | 63 | 59 | 93.6508 | |