PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51351-51400 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 14.5215 | 7.8459 | 97.3510 | 52.6646 | 220 | 2584 | 147 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 14.5031 | 86.9565 | 7.9113 | 76.9878 | 240 | 36 | 264 | 3073 | 36 | 1.1715 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 14.4928 | 8.4746 | 50.0000 | 68.4211 | 5 | 54 | 3 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002compoundhet | homalt | 14.4522 | 100.0000 | 7.7889 | 57.4332 | 31 | 0 | 31 | 367 | 366 | 99.7275 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 14.2857 | 100.0000 | 7.6923 | 79.6875 | 2 | 0 | 2 | 24 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 14.2857 | 7.6923 | 100.0000 | 45.8333 | 1 | 12 | 13 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 14.2857 | 100.0000 | 7.6923 | 87.1287 | 1 | 0 | 1 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 14.2857 | 8.3333 | 50.0000 | 95.1220 | 1 | 11 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 14.2857 | 100.0000 | 7.6923 | 80.7169 | 12 | 0 | 12 | 144 | 7 | 4.8611 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 14.2857 | 100.0000 | 7.6923 | 60.6061 | 1 | 0 | 1 | 12 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 14.2857 | 100.0000 | 7.6923 | 80.7169 | 12 | 0 | 12 | 144 | 7 | 4.8611 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 14.2857 | 100.0000 | 7.6923 | 89.6000 | 6 | 0 | 6 | 72 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | * | 14.2857 | 8.3333 | 50.0000 | 77.7778 | 1 | 11 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | het | 14.2857 | 8.6957 | 40.0000 | 95.1456 | 4 | 42 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 14.2857 | 7.6923 | 100.0000 | 80.0000 | 1 | 12 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 14.2857 | 7.6923 | 100.0000 | 93.3333 | 2 | 24 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 14.2857 | 7.6923 | 100.0000 | 93.7500 | 2 | 24 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 14.2012 | 12.0000 | 17.3913 | 88.3838 | 3 | 22 | 4 | 19 | 3 | 15.7895 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_siren | het | 14.1414 | 8.9744 | 33.3333 | 92.6056 | 7 | 71 | 7 | 14 | 6 | 42.8571 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | het | 14.1414 | 8.3333 | 46.6667 | 93.3628 | 2 | 22 | 7 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | I1_5 | HG002compoundhet | homalt | 14.0848 | 94.2249 | 7.6112 | 66.1111 | 310 | 19 | 260 | 3156 | 3150 | 99.8099 | |
| gduggal-snapvard | INDEL | D16_PLUS | segdup | * | 14.0845 | 8.6207 | 38.4615 | 94.9807 | 5 | 53 | 5 | 8 | 4 | 50.0000 | |
| jpowers-varprowl | INDEL | * | HG002compoundhet | * | 14.0649 | 13.8284 | 14.3095 | 60.1145 | 4143 | 25817 | 4126 | 24708 | 24326 | 98.4539 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | het | 14.0448 | 16.8269 | 12.0521 | 71.7051 | 35 | 173 | 37 | 270 | 38 | 14.0741 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | * | 13.9535 | 9.0909 | 30.0000 | 94.4751 | 3 | 30 | 3 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 13.8244 | 10.6122 | 19.8251 | 85.5882 | 52 | 438 | 68 | 275 | 74 | 26.9091 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 13.7681 | 7.6923 | 65.5172 | 77.6923 | 2 | 24 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e1 | * | 13.7681 | 7.6923 | 65.5172 | 78.1955 | 2 | 24 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | * | 13.7405 | 7.6923 | 64.2857 | 76.0684 | 2 | 24 | 18 | 10 | 8 | 80.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 13.6986 | 9.0909 | 27.7778 | 57.1429 | 6 | 60 | 5 | 13 | 1 | 7.6923 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 13.6364 | 100.0000 | 7.3171 | 82.8308 | 15 | 0 | 15 | 190 | 8 | 4.2105 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 13.6364 | 100.0000 | 7.3171 | 82.8308 | 15 | 0 | 15 | 190 | 8 | 4.2105 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 13.6364 | 100.0000 | 7.3171 | 82.8308 | 15 | 0 | 15 | 190 | 8 | 4.2105 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 13.6364 | 100.0000 | 7.3171 | 82.8308 | 15 | 0 | 15 | 190 | 8 | 4.2105 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 13.5593 | 8.3333 | 36.3636 | 95.1754 | 4 | 44 | 4 | 7 | 2 | 28.5714 | |
| jpowers-varprowl | INDEL | D6_15 | HG002compoundhet | homalt | 13.4561 | 79.1667 | 7.3529 | 47.3888 | 19 | 5 | 20 | 252 | 231 | 91.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 13.4283 | 7.2848 | 85.7143 | 44.0000 | 11 | 140 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 13.3942 | 7.1895 | 97.7778 | 42.3077 | 11 | 142 | 44 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 13.3646 | 83.0645 | 7.2669 | 75.3956 | 103 | 21 | 113 | 1442 | 13 | 0.9015 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | * | 13.3333 | 8.0000 | 40.0000 | 97.7974 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | * | 13.3333 | 8.0000 | 40.0000 | 98.0392 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 13.3333 | 100.0000 | 7.1429 | 86.0000 | 1 | 0 | 1 | 13 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 13.3333 | 100.0000 | 7.1429 | 89.5522 | 1 | 0 | 1 | 13 | 10 | 76.9231 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 13.1980 | 7.2626 | 72.2222 | 76.0000 | 13 | 166 | 13 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 13.1543 | 7.1138 | 87.1795 | 80.6931 | 35 | 457 | 34 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | D6_15 | HG002compoundhet | homalt | 13.1465 | 79.1667 | 7.1685 | 47.3585 | 19 | 5 | 20 | 259 | 232 | 89.5753 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 13.1073 | 56.8627 | 7.4074 | 75.4950 | 29 | 22 | 22 | 275 | 2 | 0.7273 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 13.0521 | 7.5688 | 47.3684 | 59.8945 | 33 | 403 | 72 | 80 | 25 | 31.2500 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |