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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51051-51100 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 21.6154 | 16.4179 | 31.6279 | 50.5178 | 88 | 448 | 136 | 294 | 156 | 53.0612 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 21.5835 | 18.1202 | 26.6833 | 26.4895 | 214 | 967 | 214 | 588 | 544 | 92.5170 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | hetalt | 21.5440 | 12.9032 | 65.2174 | 98.3076 | 16 | 108 | 15 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 21.4797 | 14.7388 | 39.5833 | 70.4160 | 79 | 457 | 76 | 116 | 116 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | * | 21.4346 | 13.1398 | 58.1315 | 77.3688 | 172 | 1137 | 168 | 121 | 93 | 76.8595 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 21.4286 | 24.0000 | 19.3548 | 89.1228 | 6 | 19 | 6 | 25 | 21 | 84.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 21.4286 | 39.1304 | 14.7541 | 76.8939 | 9 | 14 | 9 | 52 | 45 | 86.5385 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 21.4286 | 19.5652 | 23.6842 | 60.8247 | 9 | 37 | 9 | 29 | 29 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 21.4286 | 12.5000 | 75.0000 | 50.0000 | 3 | 21 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 21.4286 | 16.6667 | 30.0000 | 64.2857 | 4 | 20 | 3 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_siren | het | 21.4286 | 12.2449 | 85.7143 | 75.8621 | 6 | 43 | 6 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 21.3904 | 21.7391 | 21.0526 | 62.0000 | 5 | 18 | 8 | 30 | 16 | 53.3333 | |
| jpowers-varprowl | INDEL | D6_15 | HG002compoundhet | het | 21.3553 | 84.1121 | 12.2302 | 37.5281 | 720 | 136 | 748 | 5368 | 5337 | 99.4225 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 21.3305 | 14.5749 | 39.7590 | 79.5062 | 36 | 211 | 33 | 50 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | hetalt | 21.2999 | 12.8788 | 61.5385 | 98.2562 | 17 | 115 | 16 | 10 | 5 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | HG002compoundhet | het | 21.2896 | 17.8947 | 26.2741 | 51.2425 | 153 | 702 | 531 | 1490 | 935 | 62.7517 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 21.2389 | 13.0435 | 57.1429 | 46.1538 | 3 | 20 | 4 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 21.2121 | 11.8644 | 100.0000 | 33.3333 | 7 | 52 | 12 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 21.1765 | 33.3333 | 15.5172 | 87.3085 | 1 | 2 | 27 | 147 | 5 | 3.4014 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 21.1754 | 68.1818 | 12.5341 | 86.6642 | 45 | 21 | 46 | 321 | 6 | 1.8692 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 21.1214 | 16.8539 | 28.2828 | 55.6054 | 30 | 148 | 28 | 71 | 27 | 38.0282 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | * | 21.0526 | 15.3846 | 33.3333 | 82.3529 | 4 | 22 | 4 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e1 | * | 21.0526 | 15.3846 | 33.3333 | 82.3529 | 4 | 22 | 4 | 8 | 6 | 75.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 21.0526 | 100.0000 | 11.7647 | 81.7204 | 2 | 0 | 2 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m0_e0 | * | 21.0526 | 14.2857 | 40.0000 | 91.8033 | 4 | 24 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 21.0526 | 44.4444 | 13.7931 | 96.4198 | 4 | 5 | 4 | 25 | 1 | 4.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e0 | het | 21.0526 | 12.5000 | 66.6667 | 97.5806 | 2 | 14 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e1 | het | 21.0526 | 12.5000 | 66.6667 | 97.6190 | 2 | 14 | 2 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 21.0383 | 11.9565 | 87.5000 | 38.4615 | 11 | 81 | 14 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 21.0208 | 18.3844 | 24.5399 | 66.7686 | 66 | 293 | 80 | 246 | 190 | 77.2358 | |
| ghariani-varprowl | INDEL | I1_5 | HG002compoundhet | het | 21.0205 | 76.7059 | 12.1791 | 72.5111 | 652 | 198 | 721 | 5199 | 5126 | 98.5959 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.9524 | 40.7407 | 14.1026 | 96.9614 | 11 | 16 | 11 | 67 | 1 | 1.4925 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.9302 | 19.5652 | 22.5000 | 62.6168 | 9 | 37 | 9 | 31 | 31 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | HG002compoundhet | homalt | 20.9157 | 83.3333 | 11.9586 | 45.5385 | 20 | 4 | 127 | 935 | 669 | 71.5508 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 20.8955 | 13.2075 | 50.0000 | 55.5556 | 7 | 46 | 8 | 8 | 2 | 25.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 20.8696 | 12.0000 | 80.0000 | 51.2195 | 15 | 110 | 16 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 20.7836 | 13.0081 | 51.6667 | 91.2281 | 32 | 214 | 31 | 29 | 15 | 51.7241 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.7663 | 68.9189 | 12.2249 | 46.1133 | 102 | 46 | 100 | 718 | 715 | 99.5822 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 20.7254 | 14.2857 | 37.7358 | 50.4673 | 5 | 30 | 20 | 33 | 29 | 87.8788 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 20.7177 | 14.5161 | 36.1702 | 74.1758 | 27 | 159 | 17 | 30 | 17 | 56.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.3856 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.8022 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 20.6897 | 12.5000 | 60.0000 | 75.0000 | 3 | 21 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 20.6897 | 11.5385 | 100.0000 | 75.0000 | 3 | 23 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.6875 | 19.8198 | 21.6346 | 68.9552 | 44 | 178 | 45 | 163 | 158 | 96.9325 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.6825 | 16.8919 | 26.6667 | 71.6981 | 25 | 123 | 20 | 55 | 29 | 52.7273 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.8451 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.7801 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |