PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50651-50700 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.0460 | 26.6974 | 31.8478 | 58.4515 | 1624 | 4459 | 1615 | 3456 | 3422 | 99.0162 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.0406 | 21.9331 | 42.9630 | 60.8128 | 59 | 210 | 116 | 154 | 129 | 83.7662 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 29.0131 | 33.3333 | 25.6842 | 96.3865 | 1 | 2 | 122 | 353 | 87 | 24.6459 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 29.0076 | 92.6829 | 17.1946 | 91.1987 | 38 | 3 | 38 | 183 | 8 | 4.3716 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e0 | * | 28.9950 | 16.9674 | 99.5927 | 98.5624 | 489 | 2393 | 489 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 28.9696 | 23.8776 | 36.8222 | 43.6389 | 117 | 373 | 292 | 501 | 425 | 84.8303 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 28.9593 | 17.5631 | 82.4742 | 66.3778 | 320 | 1502 | 320 | 68 | 51 | 75.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002compoundhet | het | 28.9364 | 17.0213 | 96.4581 | 27.6068 | 8 | 39 | 817 | 30 | 30 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 28.8874 | 67.7551 | 18.3569 | 52.9208 | 332 | 158 | 324 | 1441 | 1432 | 99.3754 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 28.8305 | 21.2560 | 44.7917 | 78.0069 | 88 | 326 | 86 | 106 | 102 | 96.2264 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.8288 | 17.3913 | 84.2105 | 81.9048 | 16 | 76 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 28.8000 | 20.0000 | 51.4286 | 92.7835 | 19 | 76 | 18 | 17 | 3 | 17.6471 | |
| eyeh-varpipe | INDEL | D16_PLUS | HG002complexvar | hetalt | 28.7793 | 17.0040 | 93.5897 | 61.3861 | 42 | 205 | 219 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 28.7770 | 17.3913 | 83.3333 | 89.0909 | 4 | 19 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 28.7671 | 18.4211 | 65.6250 | 88.7719 | 21 | 93 | 21 | 11 | 10 | 90.9091 | |
| asubramanian-gatk | SNP | tv | map_l125_m0_e0 | homalt | 28.7587 | 16.7942 | 100.0000 | 93.2501 | 373 | 1848 | 373 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | HG002compoundhet | * | 28.7549 | 21.7001 | 42.6065 | 32.2197 | 508 | 1833 | 510 | 687 | 477 | 69.4323 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 28.7100 | 20.4082 | 48.3974 | 46.2069 | 150 | 585 | 151 | 161 | 125 | 77.6398 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.6792 | 24.6753 | 34.2342 | 68.3084 | 152 | 464 | 152 | 292 | 286 | 97.9452 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 28.6738 | 21.7391 | 42.1053 | 61.2245 | 5 | 18 | 8 | 11 | 10 | 90.9091 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 28.6628 | 18.2874 | 66.2500 | 62.2444 | 504 | 2252 | 477 | 243 | 131 | 53.9095 | |
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | homalt | 28.5867 | 16.6770 | 100.0000 | 97.2814 | 268 | 1339 | 268 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 28.5833 | 18.1471 | 67.2691 | 61.6333 | 713 | 3216 | 670 | 326 | 173 | 53.0675 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 66.6667 | 18.1818 | 96.6361 | 4 | 2 | 2 | 9 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 98.7705 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 98.7395 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 33.3333 | 25.0000 | 98.3968 | 2 | 4 | 2 | 6 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 2 | 10 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | * | 28.5714 | 25.0000 | 33.3333 | 70.0000 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | het | 28.5714 | 20.0000 | 50.0000 | 93.3884 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | het | 28.5714 | 20.0000 | 50.0000 | 93.9394 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | het | 28.5714 | 20.0000 | 50.0000 | 93.9850 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 95.3488 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e0 | * | 28.5714 | 20.0000 | 50.0000 | 95.4545 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e1 | * | 28.5714 | 20.0000 | 50.0000 | 95.5556 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | homalt | 28.5714 | 16.6667 | 100.0000 | 50.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | homalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | homalt | 28.5714 | 16.6667 | 100.0000 | 86.4865 | 1 | 5 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m0_e0 | * | 28.5714 | 16.6667 | 100.0000 | 95.0000 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | het | 28.5714 | 16.6667 | 100.0000 | 97.0297 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | het | 28.5714 | 16.6667 | 100.0000 | 97.3684 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e1 | het | 28.5714 | 16.6667 | 100.0000 | 97.3684 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.6667 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.7342 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e1 | het | 28.5714 | 16.6667 | 100.0000 | 98.7342 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m0_e0 | homalt | 28.5714 | 16.6667 | 100.0000 | 97.8723 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 28.5714 | 66.6667 | 18.1818 | 83.2061 | 2 | 1 | 4 | 18 | 5 | 27.7778 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | het | 28.5714 | 33.3333 | 25.0000 | 94.0299 | 1 | 2 | 1 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e1 | het | 28.5714 | 33.3333 | 25.0000 | 94.2029 | 1 | 2 | 1 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 28.5714 | 20.0000 | 50.0000 | 77.7778 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |