PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50101-50150 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 98.3051 | 2 | 7 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 98.3051 | 2 | 7 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 36.3636 | 22.2222 | 100.0000 | 97.4026 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | het | 36.3374 | 54.3269 | 27.2981 | 31.6711 | 113 | 95 | 1470 | 3915 | 3322 | 84.8531 | |
| ciseli-custom | INDEL | I6_15 | HG002complexvar | * | 36.3268 | 24.7913 | 67.9389 | 56.5783 | 1188 | 3604 | 1157 | 546 | 471 | 86.2637 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 36.3200 | 81.6092 | 23.3577 | 88.6542 | 71 | 16 | 64 | 210 | 1 | 0.4762 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 36.2774 | 80.9524 | 23.3766 | 99.8723 | 17 | 4 | 18 | 59 | 32 | 54.2373 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.2460 | 22.8571 | 87.5000 | 74.1935 | 8 | 27 | 7 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 36.2353 | 32.7562 | 40.5412 | 52.4633 | 4843 | 9942 | 4839 | 7097 | 7056 | 99.4223 | |
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | * | 36.2073 | 22.1125 | 99.8585 | 94.7728 | 2822 | 9940 | 2822 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.1905 | 52.7778 | 27.5362 | 94.7767 | 19 | 17 | 19 | 50 | 3 | 6.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 36.1705 | 94.9861 | 22.3385 | 27.7457 | 341 | 18 | 363 | 1262 | 1171 | 92.7892 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 36.1644 | 29.7297 | 46.1538 | 94.8310 | 11 | 26 | 12 | 14 | 4 | 28.5714 | |
| ckim-vqsr | SNP | tv | map_l150_m1_e0 | homalt | 36.1636 | 22.0730 | 100.0000 | 91.3831 | 871 | 3075 | 871 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.1446 | 22.7273 | 88.2353 | 99.4016 | 15 | 51 | 15 | 2 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | homalt | 36.1328 | 22.0501 | 100.0000 | 90.6459 | 1480 | 5232 | 1480 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 36.1290 | 77.7778 | 23.5294 | 96.8105 | 7 | 2 | 4 | 13 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 36.0728 | 82.2222 | 23.1047 | 89.1924 | 74 | 16 | 64 | 213 | 1 | 0.4695 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 36.0211 | 23.0321 | 82.6087 | 60.0000 | 79 | 264 | 38 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | HG002compoundhet | het | 36.0201 | 91.2037 | 22.4416 | 71.2332 | 1576 | 152 | 1614 | 5578 | 5463 | 97.9383 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e1 | homalt | 36.0019 | 21.9526 | 100.0000 | 96.7910 | 389 | 1383 | 389 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 35.9909 | 40.9326 | 32.1138 | 96.9858 | 158 | 228 | 158 | 334 | 23 | 6.8862 | |
| ckim-vqsr | SNP | * | map_l250_m0_e0 | homalt | 35.9844 | 21.9396 | 100.0000 | 98.1124 | 138 | 491 | 138 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_siren | homalt | 35.9820 | 27.7778 | 51.0638 | 81.4961 | 25 | 65 | 24 | 23 | 20 | 86.9565 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 35.9715 | 48.9362 | 28.4375 | 54.0890 | 92 | 96 | 91 | 229 | 220 | 96.0699 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 35.9600 | 22.9630 | 82.8571 | 58.3333 | 31 | 104 | 29 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 35.9551 | 21.9178 | 100.0000 | 84.8780 | 16 | 57 | 31 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 35.9477 | 45.0820 | 29.8913 | 77.7240 | 55 | 67 | 55 | 129 | 117 | 90.6977 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | * | 35.9447 | 23.0769 | 81.2500 | 69.2308 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | * | 35.9447 | 23.0769 | 81.2500 | 72.8814 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | * | 35.9447 | 23.0769 | 81.2500 | 73.3333 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | hetalt | 35.9102 | 22.5000 | 88.8889 | 99.0405 | 9 | 31 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 35.8974 | 23.7288 | 73.6842 | 90.0524 | 14 | 45 | 14 | 5 | 5 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | homalt | 35.8517 | 21.8411 | 100.0000 | 96.8007 | 382 | 1367 | 382 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 35.8337 | 23.4568 | 75.8621 | 81.8750 | 19 | 62 | 22 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 35.8318 | 82.3529 | 22.8972 | 89.5355 | 182 | 39 | 196 | 660 | 17 | 2.5758 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 35.8293 | 22.1968 | 92.8622 | 57.9026 | 1261 | 4420 | 1301 | 100 | 93 | 93.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.8287 | 33.0357 | 39.1376 | 73.2950 | 703 | 1425 | 708 | 1101 | 1085 | 98.5468 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.8169 | 30.4348 | 43.5115 | 29.1892 | 49 | 112 | 57 | 74 | 60 | 81.0811 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 35.8093 | 88.0952 | 22.4719 | 78.2396 | 37 | 5 | 40 | 138 | 3 | 2.1739 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | * | 35.8056 | 23.3333 | 76.9231 | 92.6346 | 21 | 69 | 20 | 6 | 3 | 50.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 35.8000 | 22.6696 | 85.0767 | 69.9119 | 608 | 2074 | 610 | 107 | 84 | 78.5047 | |
| anovak-vg | INDEL | I16_PLUS | HG002compoundhet | homalt | 35.7724 | 100.0000 | 21.7822 | 38.4146 | 3 | 0 | 44 | 158 | 97 | 61.3924 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 35.7447 | 85.7143 | 22.5806 | 94.7487 | 24 | 4 | 21 | 72 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | * | het | 35.7228 | 26.3530 | 55.4313 | 44.2246 | 2644 | 7389 | 4312 | 3467 | 1789 | 51.6008 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 35.7190 | 84.2105 | 22.6667 | 92.9112 | 16 | 3 | 17 | 58 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 35.7143 | 22.5564 | 85.7143 | 93.7500 | 30 | 103 | 30 | 5 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 35.7126 | 30.6097 | 42.8571 | 50.7598 | 738 | 1673 | 861 | 1148 | 864 | 75.2613 | |