PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50051-50100 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | ti | map_l125_m0_e0 | homalt | 36.9577 | 22.6676 | 100.0000 | 90.0284 | 1018 | 3473 | 1018 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 36.9440 | 68.9906 | 25.2262 | 52.0434 | 663 | 298 | 669 | 1983 | 1976 | 99.6470 | |
| anovak-vg | INDEL | * | HG002compoundhet | * | 36.9041 | 30.6776 | 46.3018 | 57.6241 | 9191 | 20769 | 15813 | 18339 | 13521 | 73.7281 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 36.8928 | 25.8537 | 64.3836 | 82.9837 | 53 | 152 | 47 | 26 | 1 | 3.8462 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 36.8928 | 25.8537 | 64.3836 | 82.9837 | 53 | 152 | 47 | 26 | 1 | 3.8462 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 36.8670 | 24.7423 | 72.2944 | 43.7956 | 96 | 292 | 334 | 128 | 127 | 99.2188 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 36.8301 | 26.7943 | 58.8859 | 77.4791 | 224 | 612 | 222 | 155 | 153 | 98.7097 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 36.8196 | 27.4987 | 55.6992 | 44.8224 | 542 | 1429 | 1852 | 1473 | 1170 | 79.4297 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 36.8196 | 27.4987 | 55.6992 | 44.8224 | 542 | 1429 | 1852 | 1473 | 1170 | 79.4297 | |
| ghariani-varprowl | INDEL | I1_5 | HG002compoundhet | homalt | 36.8099 | 93.9210 | 22.8907 | 61.1792 | 309 | 20 | 312 | 1051 | 920 | 87.5357 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.7887 | 26.4368 | 60.4651 | 99.9570 | 23 | 64 | 52 | 34 | 23 | 67.6471 | |
| jpowers-varprowl | INDEL | I1_5 | HG002compoundhet | homalt | 36.7720 | 93.9210 | 22.8614 | 60.8545 | 309 | 20 | 310 | 1046 | 940 | 89.8662 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 36.7443 | 23.6507 | 82.3171 | 53.0758 | 872 | 2815 | 810 | 174 | 64 | 36.7816 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.7347 | 85.7143 | 23.3766 | 97.5877 | 36 | 6 | 36 | 118 | 1 | 0.8475 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 36.7207 | 26.5537 | 59.5041 | 62.8834 | 47 | 130 | 72 | 49 | 25 | 51.0204 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | het | 36.6957 | 22.5910 | 97.6852 | 83.7594 | 211 | 723 | 211 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002compoundhet | het | 36.6885 | 59.5745 | 26.5060 | 84.0077 | 28 | 19 | 22 | 61 | 60 | 98.3607 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 36.6856 | 81.4433 | 23.6749 | 89.0986 | 79 | 18 | 67 | 216 | 1 | 0.4630 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 36.6612 | 27.4933 | 55.0021 | 33.8540 | 204 | 538 | 1281 | 1048 | 886 | 84.5420 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 36.6412 | 23.3010 | 85.7143 | 59.4203 | 48 | 158 | 48 | 8 | 8 | 100.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 36.6255 | 74.3733 | 24.2948 | 50.0227 | 267 | 92 | 267 | 832 | 775 | 93.1490 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 36.6202 | 25.3766 | 65.7534 | 73.0876 | 219 | 644 | 192 | 100 | 2 | 2.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 36.5768 | 92.3077 | 22.8070 | 64.5963 | 12 | 1 | 13 | 44 | 41 | 93.1818 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 36.5732 | 34.6847 | 38.6792 | 60.6679 | 77 | 145 | 82 | 130 | 106 | 81.5385 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 36.5445 | 33.8941 | 39.6445 | 65.7686 | 1088 | 2122 | 1093 | 1664 | 1651 | 99.2188 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 36.4602 | 27.1762 | 55.3790 | 36.8827 | 256 | 686 | 1359 | 1095 | 912 | 83.2877 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.4238 | 22.7273 | 91.6667 | 97.8799 | 10 | 34 | 11 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 36.4192 | 29.7932 | 46.8354 | 63.9946 | 634 | 1494 | 629 | 714 | 663 | 92.8571 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | homalt | 36.3977 | 22.2477 | 100.0000 | 97.9282 | 97 | 339 | 97 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 36.3779 | 31.5041 | 43.0357 | 63.8943 | 155 | 337 | 241 | 319 | 270 | 84.6395 | |
| eyeh-varpipe | INDEL | I6_15 | HG002compoundhet | * | 36.3679 | 28.3500 | 50.7094 | 30.4777 | 2488 | 6288 | 2502 | 2432 | 2425 | 99.7122 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 95.3488 | 6 | 21 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 36.3636 | 22.2222 | 100.0000 | 90.0000 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m1_e0 | het | 36.3636 | 22.2222 | 100.0000 | 80.0000 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | het | 36.3636 | 22.2222 | 100.0000 | 81.8182 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e1 | het | 36.3636 | 22.2222 | 100.0000 | 82.6087 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.3636 | 23.8095 | 76.9231 | 99.8504 | 10 | 32 | 10 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 36.3636 | 25.0000 | 66.6667 | 85.2459 | 6 | 18 | 6 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | * | 36.3636 | 50.0000 | 28.5714 | 97.0954 | 2 | 2 | 2 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 36.3636 | 100.0000 | 22.2222 | 92.1739 | 2 | 0 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | het | 36.3636 | 28.5714 | 50.0000 | 63.6364 | 2 | 5 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | homalt | 36.3636 | 33.3333 | 40.0000 | 87.1795 | 2 | 4 | 2 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 36.3636 | 100.0000 | 22.2222 | 94.4785 | 4 | 0 | 4 | 14 | 3 | 21.4286 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 50.0000 | 28.5714 | 68.1818 | 1 | 1 | 2 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 36.3636 | 25.0000 | 66.6667 | 96.8750 | 2 | 6 | 10 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 36.3636 | 25.0000 | 66.6667 | 97.5936 | 1 | 3 | 6 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 36.3636 | 25.0000 | 66.6667 | 92.1053 | 1 | 3 | 4 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 36.3636 | 33.3333 | 40.0000 | 72.2222 | 1 | 2 | 2 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 98.2456 | 6 | 21 | 1 | 0 | 0 | ||