PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49751-49800 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 86.6613 | 87.3341 | 85.9988 | 44.9670 | 12039 | 1746 | 13212 | 2151 | 1124 | 52.2548 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 86.6667 | 76.4706 | 100.0000 | 91.4474 | 13 | 4 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.3295 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | het | 86.6667 | 81.2500 | 92.8571 | 94.6360 | 13 | 3 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 88.4120 | 26 | 7 | 26 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 90.0662 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.1765 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.5254 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.2778 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.3448 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.6960 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.4455 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.9450 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 86.6667 | 86.6667 | 86.6667 | 96.9512 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | het | 86.6667 | 86.6667 | 86.6667 | 98.2639 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.6667 | 81.2500 | 92.8571 | 96.5432 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 86.6667 | 76.4706 | 100.0000 | 95.1493 | 13 | 4 | 13 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 86.6667 | 86.6667 | 86.6667 | 95.5752 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 86.6667 | 86.6667 | 86.6667 | 95.5752 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 90.6574 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 91.0000 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 91.1765 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 86.6667 | 100.0000 | 76.4706 | 60.4651 | 13 | 0 | 13 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 86.6667 | 86.6667 | 86.6667 | 94.3609 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 86.6667 | 86.6667 | 86.6667 | 95.0166 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 86.6667 | 86.6667 | 86.6667 | 95.1378 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | * | 86.6667 | 86.6667 | 86.6667 | 98.7923 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | segdup | homalt | 86.6667 | 78.0000 | 97.5000 | 90.3614 | 39 | 11 | 39 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 86.6667 | 81.2500 | 92.8571 | 88.7097 | 13 | 3 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 86.6667 | 81.2500 | 92.8571 | 88.8889 | 13 | 3 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | het | 86.6667 | 79.5918 | 95.1220 | 66.6667 | 39 | 10 | 39 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | het | 86.6667 | 76.4706 | 100.0000 | 85.7143 | 13 | 4 | 13 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | het | 86.6667 | 100.0000 | 76.4706 | 94.7639 | 39 | 0 | 39 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | segdup | homalt | 86.6667 | 78.0000 | 97.5000 | 90.4988 | 39 | 11 | 39 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.6667 | 92.8571 | 81.2500 | 94.6932 | 26 | 2 | 26 | 6 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 86.6667 | 86.6667 | 86.6667 | 96.0212 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 86.6667 | 76.4706 | 100.0000 | 99.4338 | 13 | 4 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.6705 | 87.5205 | 85.8369 | 72.0400 | 533 | 76 | 600 | 99 | 82 | 82.8283 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.6742 | 85.1675 | 88.2353 | 70.5628 | 178 | 31 | 180 | 24 | 21 | 87.5000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 86.6794 | 93.1497 | 81.0496 | 83.5702 | 2502 | 184 | 2502 | 585 | 8 | 1.3675 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.6795 | 97.9333 | 77.7454 | 76.6397 | 2938 | 62 | 2938 | 841 | 597 | 70.9869 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 86.6815 | 77.7114 | 97.9925 | 71.6067 | 781 | 224 | 781 | 16 | 10 | 62.5000 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | het | 86.6873 | 94.5946 | 80.0000 | 94.4030 | 35 | 2 | 36 | 9 | 8 | 88.8889 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 86.6885 | 80.3324 | 94.1368 | 55.4427 | 290 | 71 | 289 | 18 | 5 | 27.7778 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | * | 86.6896 | 77.1930 | 98.8506 | 81.4894 | 88 | 26 | 86 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 86.6953 | 95.6926 | 79.2444 | 84.6511 | 2266 | 102 | 1783 | 467 | 71 | 15.2034 | |